Quercus suber (cork oak): 112005007
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Entry
112005007 CDS
T05868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112005007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112005007
03012 Translation factors [BR:
qsu03012
]
112005007
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112005007
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112005007
Translation factors [BR:
qsu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112005007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
HA2_N
Ank_5
ATPase
AAA_22
nSTAND3
Ank_2
AAA_25
MetJ
AAA_19
AAA_7
Rad17
T2SSE
ABC_tran
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
112005007
NCBI-ProteinID:
XP_023893017
LinkDB
All DBs
Position
Unknown
AA seq
1229 aa
AA seq
DB search
MARNKKKKLWKRDNVDVSKLNIAESTTIHITQQLQKFFESKAEVYKFEDNLSSNERAAVH
ELCRKMGMTSKSKGHGGQRRVSVFKPKKQVATRKGLNSLTHLTFSEGAKVVLHDLFTQYP
PDDEEVDKEKVGKKNERVDKMRRSKVDIFLKPVMSKAEIAKKVESLASKIERAANLKQVT
EGRSKLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQYLLDNMWGKGEACKIVCTQ
PRRISATSVAERICYERGGNIGDDVGYKIRLESKGGRNSSIVFCTNGILLRVLISEGAGR
SKTEGGAKSAKREISGITHIIVDEIHERDRYSDFMLAILRDFLPSCPHLRLILMSATIDA
ERFSQYFGGCPIIRVPGFTYPVNIFYLEDVLLLLKSVENNNPDNTLAVVPSEDPELTEEE
KLALDEALNLAWSSDEFDPLLELVSSEGTQKVFNYQHSLTGLSPLMVFAGKGRVADVCML
LSFGVDCHLQAKDGSTALELAERENQQEAAVIIKKHMECSISNSIEEQQILDKYLGKMNP
ELIDVVLIEQLIRRICTDSQEGAILVFLPGWEDINKTREKLNASAFFKDASKFMVLCLHS
MIPSVEQKKVFKRPAPGCRKIVLATNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL
QSSWVSKASAKQREGRAGRCQPGICYHLYSKLRADSLPEFQLPEIKRIPIEELCLQVKLL
DPNCKIEDFLNKTLDPPVFEAVRNAILVLQDIGALSVGEKLTELGEKLGSLPVHPLTSKM
LFFAIMMNCLDPALTLACASDYRDPFTLPMLLIDKKRADAAKSELASLYGGTSDQLAVIA
AFECWNNAKQRGQEERFCSEYFISKSTMSMLSGMRKQLQNELIRNGLIPDDVSRCSLNAR
DPGVLHAVLVAGLYPMVGRLRPPHKNAKRFVETSGGDKVRLHPHSTNFKLSFSKTNHCPL
IMYDEVTRGDGGMIIRNSTVVGPLPLLLLATEIAVAPANNDDEDEEDDDDDSDGDESDED
GMDIDKKSVGRHEEKIMSSPDNSVTVIVDRWLFFGSTALDIAQIYCLRERLLAAILFKVT
HPRTDLPPVLEASMHALARILSYDGLSGVLLPLESVDSLTSMVNATEIDKYSPGKKKEMV
QNPNGFLRSLMTQGTPKRFPCHHHNTKVPASKGPTNLGAPSSHNVRPPLNSAGMKFAPQG
SRLNGDGLATQSHGPRGDSLKRQRENGTG
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggccaggaacaagaagaagaaactgtggaaacgcgataacgtggacgtttcaaagctt
aacattgctgaatccacaacgattcacattacccaacaacttcagaagttctttgaatcc
aaggcggaagtttacaagtttgaagataacctgtcgagcaatgaacgtgcggcggtgcat
gaattatgcaggaaaatgggtatgacgtccaagagtaaagggcacgggggccagcgtcgt
gtatctgttttcaaacctaaaaagcaggttgccaccaggaaggggctgaacagtctaact
catttgacattttcggaaggggcaaaagtggttttacatgatttgtttactcaataccca
cctgatgatgaagaggtggacaaggaaaaggttgggaagaaaaatgaaagagttgataaa
atgcgacggagtaaagttgatattttccttaagcctgtaatgagcaaagcagaaattgcg
aagaaagtggagtcacttgcttccaaaattgagagggccgcaaatttgaaacaggtaact
gaaggcaggtctaagcttccaattgcatcctttaaggatgtcattacatcaacaattgaa
tctcaccaggtagttctcatatctggtgagactgggtgtggaaagaccacgcaggtccct
caatatcttctagataatatgtggggtaagggtgaggcctgtaaaattgtgtgtactcaa
cctcgacgtatctcagcgacatcagttgctgagagaatctgttatgaaagaggagggaat
attggtgatgatgttggatacaagatacgattggaaagcaaaggtgggaggaactcatcg
attgtgttctgcacaaatgggattttattgagggtgctaatttctgaaggggctggtagg
tcgaaaacagaaggcggagcgaaatctgcaaagcgagagatttctggcattactcacatt
atcgtggatgaaattcatgaaagggatcgctactctgattttatgttggcaattctcaga
gactttcttccttcctgtcctcatctgcgtttgatacttatgagtgctactattgatgct
gaacgattttcgcaatattttggtggctgcccaatcatccgtgtccctgggttcacttat
cctgttaacattttttatttggaggatgtacttttgctcctgaaatcagtggaaaataat
aatcctgataatactttagctgttgtccctagtgaggacccagagttgacagaggaagaa
aagcttgctttagatgaagccctgaatctggcttggtcaagtgatgagtttgatccactc
ttggagctggtttcttctgagggtacccaaaaggtgttcaattaccagcattctttgact
gggctatcaccattgatggtatttgctggaaagggtagagtggctgatgtttgcatgctc
ctatcttttggggtggattgtcatttacaggctaaggatggatctactgcattggagttg
gctgaacgagaaaaccaacaggaagcagctgtaataattaaaaaacatatggaatgttcc
atttccaactccatcgaagaacaacaaatacttgataagtatctaggaaaaatgaatcct
gaacttattgatgttgttcttatagagcagttgatacggagaatatgtactgattcacaa
gaaggagcaatccttgttttcctaccaggatgggaggatataaataaaacccgggagaaa
ctgaatgcatctgcatttttcaaagatgcttccaagtttatggtattatgtctccattct
atgattccatctgtggagcaaaagaaagtttttaaacgtccagctcctggatgccggaaa
attgttcttgcaaccaatattgctgaaactgccattaccattgatgatgttgtgtatgtt
atagacagtggtcgtatgaaggagaaaagttatgatccttataataatgtatcaaccctt
caatcttcttgggtctcaaaagcaagtgcaaagcaaagagaaggacgtgcgggccgctgt
cagcctggaatttgttatcatctctattcaaagcttcgagcggattctttgccagaattt
caacttcctgaaattaagagaatcccaattgaggaactatgtctgcaggtgaaactgctc
gatccaaattgcaagatagaagatttcttgaacaagacattagatcctccagtttttgag
gccgtacgaaatgcaattttagttcttcaagatattggggctttgtcagttggtgaaaag
cttactgaacttggggaaaagcttggttctctacctgtgcatccattgacgagcaagatg
cttttctttgctataatgatgaactgccttgacccagcattgactctggcatgtgcctct
gactatagagatccatttactcttcccatgttactgatagataagaagagagctgatgct
gctaaatctgagcttgcatcattgtatggtgggactagtgatcagctagcagtaatagca
gcatttgagtgctggaataatgcaaagcaaaggggccaagaggaacggttctgttctgaa
tactttatctctaaaagcactatgagtatgttgtctggtatgcgtaagcagctccaaaat
gaactaattcggaatgggcttattcctgatgatgtttcccgttgtagcttgaatgcgcgt
gacccaggtgtactccatgcagtccttgtggctggtttgtatcctatggtgggaagattg
cgtccacctcataaaaatgcaaaacgatttgtagagacttcgggtggtgataaagttcgt
ttgcacccccattctactaattttaagttgtcattcagcaaaaccaatcattgccctttg
attatgtatgatgaggtaactcggggagatggaggtatgatcataaggaacagtactgtg
gttggaccactcccattattattgcttgcaacagagattgctgttgctccagcaaataat
gacgatgaagatgaggaagatgatgatgatgacagtgatggagatgaaagtgatgaagat
ggaatggatattgataagaaatcagttggacgacatgaagaaaagatcatgtcatctcct
gataattcagtgacagtcattgtcgatcggtggctcttttttgggtctacagcacttgac
attgctcaaatttactgcttgagagagcgattattagcagcaatcttattcaaagtaaca
catccaaggactgatcttcctcctgttcttgaggcctcaatgcatgctctagcccgtatt
ttatcttacgacgggctatctggagtgttattgccattagaatctgtggattcactgact
tcaatggtaaatgctactgagatcgacaagtattccccagggaagaagaaagagatggta
cagaatccaaatgggttcctaagatcacttatgactcaaggcacacccaagaggtttcct
tgccatcatcacaatactaaggtacctgcatcaaagggaccaacaaatttgggtgccccg
tcaagtcacaatgttcggccgccacttaattcagctggcatgaaatttgcaccacagggt
tccagattaaatggggatggtttggccacgcagtcacatggtcctaggggagactccctt
aagcggcagcgtgaaaatgggactggataa
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integrated database retrieval system
