Quercus suber (cork oak): 112005225
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Entry
112005225 CDS
T05868
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03020
RNA polymerase
qsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112005225
09124 Replication and repair
03420 Nucleotide excision repair
112005225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112005225
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112005225
Enzymes [BR:
qsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112005225
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112005225
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112005225
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_2
RNA_pol_Rpb2_5
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-GeneID:
112005225
NCBI-ProteinID:
XP_065635282
LinkDB
All DBs
Position
Unknown
AA seq
881 aa
AA seq
DB search
MVMLFSHLLQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYF
GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDN
GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN
SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE
EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDI
RLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRENPEDGGWHDLVAKGFIEYID
TEEEETTMISMTIPELIQARLSEDAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT
YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA
CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG
SYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQDEAQGQASRYSRRDHSISLRHSETGIVD
QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDI
IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE
TMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
GEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDI
VQVHIPYACKLLFQELMAMAIAPRMLTKEVKPIKDNKKKGA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggtcatgttgttctctcatttgctgcaggttgcactagattatattggaaaacgagga
gcaactgttggtgtaactagggaaaaaaggatcaagtatgccaaagaaattcttcaaaag
gaaatgcttcctcatgttggtgttggagaattttgtgagacgaagaaagcttactatttt
ggatatattattcaccggcttcttctgtgtgcacttggtcggagggcagaagatgacagg
gatcactatggcaacaagaggctggaccttgctggtcccttacttggaggcttatttaga
atgctattcagaaaattaactagggacgtgagaggttatgtgcagaagtgtgtagataat
ggaaaggatgttaacctccaattcgccatcaaagcaaagaccatcaccagtggtctcaaa
tactcacttgccactggaaactgggggcaagcaaatgctgctggtacaagagctggagtt
tcacaggtgttgaatcgcttgacatatgcctccaccttatcacatctgagaagactaaat
tctcccataggacgtgaagggaaattggccaaaccccggcagttgcataattcacaatgg
ggaatgatgtgtccagctgaaacacctgaaggacaagcatgtggactggtaaagaatctt
gcactgatggtgtatataaccgttggatcagcagcatatcctattttggaatttttggaa
gaatggggtacagaaaattttgaggaaatttctcctgcggttattccgcaagctaccaaa
atttttgtcaacggttgctgggttggtattcatcgggatcctgatatgttggtgaaaaca
ttaagacggctgaggcgaagggttgatgttaatactgaagttggggttgttagagatatc
cgcttgaaagaactgcggatatatactgattatggccgttgcagtcgtccactattcatt
gtggaaaagcaaaggcttctcataaagaagaaggatatccatgcattgcagcagagggaa
aaccctgaggatggtggttggcatgatcttgttgctaagggattcatagagtatattgac
acagaagaagaagagaccaccatgatttccatgaccatacctgaacttatacaagcgaga
ctctctgaggatgcttattctggtacttacacccattgtgaaattcacccttcattgatt
ttgggtgtttgtgcttcaattataccatttccagatcataatcagtccccacgtaatacg
tatcaatcagctatgggtaagcaagccatgggtatttacgtcaccaactaccaatttcga
atggatacattagcttatgttctatattatcctcaaaagccacttgtaaccacacgagcc
atggagcatctccacttcaggcagcttcctgctggcattaatgccattgttgctattgcc
tgctattctggttataaccaggaagattctgtcattatgaaccagtcatctatagaccgc
ggattctttcggtcactatttttccgttcatatcgggatgaggaaaagaagatgggaact
cttgtcaaagaggattttgggcgcccagaccgttctaataccatgggtatgcgacatggc
tcttatgataaattggatgatgatggtcttgcccctcctggtacaagagtttcaggtgag
gatgtgatcattggaaagacaactcctctttctcaggacgaagctcagggacaagcttca
cgttattcacgccgtgatcatagcataagcctgcgccacagtgaaactggaatcgtggat
caagttctattgacaacaaatgcagatgggctaaggtttgtaaaagtaagggtgagatct
gttcgaatacctcaaataggggataaatttagcagtcggcatgggcaaaaaggaacagtg
ggcatgacatatactcaagaagacatgccatggaccatggaagggatcacccctgatatc
attgttaatccgcatgccattccttcacgtatgacaattggtcaactgattgagtgtatc
atgggcaaggttgcagctcacatgggaaaggaaggagatgctactcctttcacagatgtg
actgtggacaatatcagcaaagctcttcacaaatgtggctatcaaatgcgtggctttgag
accatgtataatggtcacacaggccgacgtctacctgctatgatattccttggccccact
tactaccaaagacttaagcacatggttgatgacaagatccattcacgcgggcgtgggcct
gtgcagatactgacaaggcaaccggctgaggggcggtcccgtgatggaggtcttcggttt
ggagaaatggaacgagattgcatgattgcccatggtgctgctcactttctcaaagagagg
ttgtttgaccaaagtgatgcatatcgggtccacgtttgtgaacgatgtgggttgatagct
attgcaaatttgaagaagaattcttttgagtgtagaggttgcaagaacaagactgacatt
gttcaggttcacattccttacgcttgtaagctgctcttccaagagcttatggccatggct
atagcaccaagaatgctcacaaaggaagtcaaaccaatcaaagacaataagaaaaaagga
gcctga
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