Quercus suber (cork oak): 112005592
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Entry
112005592 CDS
T05868
Name
(RefSeq) endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
qsu
Quercus suber (cork oak)
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
qsu03036
]
112005592
Chromosome and associated proteins [BR:
qsu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112005592
microRNA pathway
RISC loading complex
112005592
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
Helicase_C
DEAD
ResIII
PAZ
SWI2_SNF2
SNF2-rel_dom
DND1_DSRM
SLFN-g3_helicase
Pet191_N
Motif
Other DBs
NCBI-GeneID:
112005592
NCBI-ProteinID:
XP_065619252
LinkDB
All DBs
Position
Unknown
AA seq
1678 aa
AA seq
DB search
MLCLEQQNQTQNLLPPKRSSSDMNESDHDLSVQESPSSSSPKCMKPRGYQLRVFEVAKKR
NTIAVLETGAGKTLVAVMLIKAIFEAIKSNGHKKLIVFLAPTVHLVNQQFEFIKNHTNME
VGQYYGDMGVDNWSLETWEREVNKNNVLVMTPQIFLDVLRKAFLSPEAVCLMIIDECHRA
TGNHPYTKIMKEFYHNSNNKPKIFGMTASPVVRKGVSSIVDCEGQISELENILDSQIYTV
GDRTEIEVYVPSAKETCRFYDQAQFPSLDLKGKIEALCSKFDASLLELQGSLQNNYKDTD
DKFNMLRKRLSNDQAKVLYCLDDLGLMCAYEAVKVCLENVPNSNAECEVYRESYFLCKRF
LEEVLCIIGEFFPHDDENLLDLRSGYLKAVDLGYLSPKLHELLQLFQSFGGAEQVLCLIF
VERIVTAKVIERFMKKVTSLSHFTVSYLTGSNTSVDSLPSKKQKETLESFRSGKVNLLFA
TDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQDNSQFVMMLERGNTKQRDQLFDI
IRSEHSMTDTAMNRDPDAHILKACTTEEVNAYHVEATGASVTADSSVNLIHRYCEKLPGD
KYFVPKPKFHISLIEGSYECKMTLPPNAAFQSIVGPSSRNSHLAKQLVCLEACKKLHQMG
ALDDHLLPSIKELPEKNLIVKSKESASGAGTTKRKELHGTTCIRALSGTWGEKVNGAIFQ
AYKFEFLCNIPGELYSGFVLLLESKLDDDVGNIELELYLVSKKVKSSVSFCGQVHLDAEQ
MTKAKCFQEFFFNGLFGRLFFGSKSAGTCREFLLKNETRSLWSPSNMYLLLPLETLNTSS
PEPCQINWIGINSCISAVEIMKKSSLLGAEHCNGETGNLSPYRNGSCSTNVIHFAYSMAD
TNNLKDMVVLAIHTGKIYSVVEVVNNTSAESPFDGNTDNASSKYMTFSEYFNKKYGITLM
YPGQPLLRLKQSHNPHNLLVNFDEEGTTGKTLEAGVLVKKAQMHVHMPPELLIRLDVSRG
VLRSFYLLPSVMHRLESLMLASQLREEICCSSNFHISSALILEALTTLRCSENFSMERLE
LLGDSVLKYAVGCHLFLKYPKKHEGQLTDIRIRVICNATLHKLGTDLKLQGYIRDSAFDP
RRWVAPGQRSIRPVPCKCGVDTPEVPLDAKFHTEDPKVLIGNSCDKGHRWMSSKTIADCV
EALIGAYYVGGGIIAALHLMKWLGIDAELDPVLVVEAITTASLRSYVPKDNEIATLESKL
GYEFSVKGLLQEAITHASQQELGVGYCYQRLEYLGDSVLDLLITWHLYQSYTDIDPGELT
DLRSASVNNENFAQAAVRQNLHQHLQHCSGLLLSQITEYVKSISESHTDGSLQLPKGPKA
LGDMVESIAGAILLDTKLNLNEVWRIYKPLLSPIVTPDKLELHPFRKLNELCASRGYFIK
EKFIKKGDMVHAELSLQLKDVLLIGEGYEGGKKIARGEAACRLLKELEKRGIVFSRSASK
KRKLDADHIDNSTASYMEIDVCDQLTDGNLSELAINKKRKSTEDQLPPESTGFSSPTYDC
SNKDCSPNSGTPVIATINTKKGGPRTTLFELCKKVQWPMPTFNSTENKSRSPIEFGEGSE
IRNGFNSFVSRISLHIPKFGSMECTGDARADKKSALDSAALVMLYELERQGKLVIGGS
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgctttgtttagagcagcagaatcagacccagaatcttcttcctcccaagcggagctca
agtgatatgaatgaatctgatcatgatctttctgttcaagaatcaccctcttcttcaagt
cccaagtgcatgaagcccagagggtaccaattgcgagtgtttgaagttgcaaagaagagg
aacaccatagcagtgttggagacaggtgctggcaagactttggttgccgttatgcttatc
aaagccatttttgaagctatcaagtctaatggccataaaaagttgattgttttcttggct
cccactgtccatcttgttaatcagcaatttgagtttataaaaaaccatacaaatatggaa
gtggggcagtactatggagacatgggagttgataattggagtttagagacctgggaaagg
gaagttaataagaataatgtactagtaatgacaccccagatatttttggatgtcttaaga
aaggcattcttgagtccagaagcagtatgcttaatgataattgatgaatgtcatcgtgct
actggtaaccatccatatacaaaaataatgaaggaattttatcataattctaataacaag
ccaaaaatttttggaatgacagcatcccctgtagtgagaaaaggtgtctcatccattgtg
gactgtgagggtcaaatatcagaactagaaaatattctggattcccagatttatactgtt
ggagacaggacagagattgaagtgtatgtgccctctgcaaaagaaacttgtagattttat
gaccaagcacagtttcccagtttggatttaaaggggaaaatagaggccttgtgttccaag
tttgatgcgtccttgttagagttgcaagggtcgttgcaaaataattacaaggacacggat
gataaatttaatatgctgcgaaagcgtttgtctaatgatcaggcaaaggttttgtattgt
ctggacgaccttggactcatgtgtgcttatgaggctgtgaaagtctgtctagagaatgtt
ccaaacagcaacgcagagtgtgaagtttatagagaaagttactttctgtgtaaacgtttt
cttgaggaagtcttgtgtataattggggaattcttcccacatgatgatgaaaatcttctg
gatttacggtctggttatttaaaagcagtagatttgggctatttatctcctaaactacat
gaacttcttcaacttttccagtcatttggaggagctgagcaagtactgtgcctcattttt
gttgagagaattgttacagctaaggtaattgagagattcatgaagaaagttacctcttta
tcacatttcacggtttcatatttgactggaagtaatacgtcagtggactcgctgccgtca
aaaaagcaaaaggaaacattggagtcatttcgctctggcaaggtcaatttattatttgct
actgatgtagttgaggagggaattcacgtgccaaactgctcttgtgtgatacggtttgac
ctccccaagacagtccgtagttatgtccaatctcggggacgagctcgacaggataactct
caatttgtcatgatgttggagaggggaaacacaaaacaaagggatcaactgtttgacata
atcaggagtgagcattcaatgacagatacagccatgaatagagaccctgatgcacacatt
ctgaaggcatgtactactgaggaagtaaatgcatatcatgtggaagcaactggggcctcg
gttactgcagattctagtgtcaacctcattcatcgatattgtgaaaaacttcctggtgac
aagtactttgtcccaaagccaaaatttcatatttcacttatcgaagggtcttatgagtgt
aaaatgacattaccccctaatgcggcttttcaatccatagttggtccctcaagtagaaat
tctcatttagcaaaacagcttgtttgcttggaagcatgtaagaagttgcatcaaatgggt
gctttggatgatcatcttctcccatccatcaaagagcttccagagaaaaatctcattgta
aaaagcaaagaatcagcttcaggtgcaggaacaacaaagaggaaggagttacatgggact
acttgcattcgtgcactatccggaacttggggagaaaaagtcaatggagccatttttcag
gcctataaatttgaatttttatgtaatattcccggagagctttattctggatttgttctt
ttgcttgagtcaaagcttgatgatgatgtgggaaatattgaattggagctttacttggtc
tcaaagaaggttaagtcttctgtatctttttgcgggcaagtgcatttggatgcagaacag
atgacaaaagcaaagtgctttcaagaatttttctttaatggtttgtttgggagattgttt
tttggatctaaatcagctggaacatgcagagaatttttacttaagaatgaaactagatca
ctatggagcccatcaaacatgtatttgcttctacctctcgaaacattgaacacttcaagt
cctgagccttgccaaataaattggataggcatcaattcttgcatttctgcggtagaaatc
atgaaaaaaagctctttgttgggtgctgaacattgtaatggtgagacaggaaatttatca
ccttataggaatggttcatgcagcactaatgttatccactttgcttatagtatggctgac
acaaacaatctcaaagatatggtagttttggcaattcacactggaaaaatctactctgtt
gttgaggttgtgaataatacctctgctgagagtccttttgatggaaacactgataatgcc
tcatcaaaatatatgacattttcagagtacttcaacaaaaagtatgggataacactgatg
tatccaggacagcctttgctgcggttaaagcaaagtcataacccacacaaccttcttgta
aacttcgatgaggaaggcactactggtaagacattggaagcaggtgtgcttgtcaaaaag
gcacaaatgcatgttcatatgcctcctgagcttttaatcaggcttgatgtttccagagga
gttttaagatcattttatttattaccatctgtgatgcatcggctggaatcccttatgtta
gccagccagcttagagaagagatttgttgttctagcaactttcatatttcaagcgctttg
attctagaagctcttacaacactaagatgttctgagaatttttcaatggagcgattggaa
ttgcttggtgattcggttctaaagtatgcagtgggctgtcacctctttcttaaatatcct
aagaagcatgaagggcaattaactgatatacgtatacgggttatttgtaatgcaacccta
cataaattgggaacagatctcaaattacagggatatatacgtgacagtgcatttgatcct
cgtcgttgggttgctccaggacagcgttccattcggcctgttccttgtaaatgcggggtg
gatactccagaagtgcctttggatgcaaaattccatactgaagacccaaaagttttgatt
ggaaatagctgtgataaaggtcatcgatggatgagttcaaaaaccatagctgattgtgtt
gaagccctcataggagcatactatgtgggtggtggaataattgctgcactccatctgatg
aagtggcttggaattgatgctgaacttgatcccgtgttagttgttgaagcaattactact
gcttctctacggtcctatgtcccaaaagataatgagattgcaaccctagagtcaaagctt
ggttatgaattttctgttaagggtcttttacaggaggccataacacatgcatcccagcaa
gaactgggagttggctattgttaccagaggcttgaatatcttggtgactcggtgttggac
ctgcttattacgtggcatctctatcagagctacacagatattgatccgggcgagttaact
gacttgcgttcagcttcagtaaataatgaaaatttcgctcaagccgctgtaagacaaaac
cttcaccagcatcttcaacactgctcagggttacttctaagtcagataacagaatatgtg
aagtctatttctgaatctcatactgatggatcactccaactcccaaaaggtcctaaggct
cttggagatatggtggaaagtattgcaggggcaatactacttgacaccaagcttaatctt
aatgaagtttggaggatatataagcccctgttgtctccaattgtgacccctgataagctt
gaactgcatccatttcgaaaactgaatgaattatgtgcatctcgtgggtattttataaaa
gaaaaatttataaagaagggagatatggtgcatgctgagcttagtttacaactgaaagat
gtccttttgattggagagggatatgagggggggaaaaaaattgcaagaggagaagcagct
tgtcgcttattaaaggaacttgagaaaagaggaattgtattctcccgtagtgcttccaaa
aagagaaaactggatgctgatcatatcgacaattcaactgcttcatacatggaaattgat
gtatgtgatcaattaactgatggaaatctttcagagctagcgatcaataaaaagcgaaaa
tcaactgaagatcaattgcctcctgagtcaactggtttttcttccccaacttatgattgt
tctaacaaagactgcagtcccaacagtggcaccccagttattgccacaatcaacacaaag
aaaggaggaccccgaaccactcttttcgaattatgtaagaaagtgcagtggccaatgcct
acattcaattcaacggaaaataaatcaagatctccaattgaatttggagaaggctctgaa
ataagaaatgggtttaacagttttgtatcaaggataagcttgcacattcccaaattcggc
agtatggaatgcacaggagatgctagagctgataagaagagtgcacttgactccgcagcg
cttgtcatgctctatgagcttgaacgacagggaaaacttgtcattggtggctcctaa
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integrated database retrieval system
