Quercus suber (cork oak): 112005990
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Entry
112005990 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC112005990
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
qsu
Quercus suber (cork oak)
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
qsu03009
]
112005990
Ribosome biogenesis [BR:
qsu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
112005990
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
DUF1848
Motif
Other DBs
NCBI-GeneID:
112005990
NCBI-ProteinID:
XP_065630908
LinkDB
All DBs
Position
Unknown
AA seq
2703 aa
AA seq
DB search
MATTSQAQAVKSLNKSPGRRRFVFKNFSQRVEEIEIDVFRSLNKVKAEPSEGSSFFRDCL
TEWRELNTAEDFISFYEEMLPLVQTLPLIILQKELIFSKLIPRLQMSARLSLEPILRLLA
ALSRDLLVDFIPFMPRIADSLVSLLETGADREPEIIEQIFTSWSYIMMYLQKYLIRDLVY
VLKVTLKLRYYPKEYVQEFMAEAISFLFRNAPAEQLQEGIKKIMTEVIKKPLPARKCGIS
ALLFYVMRGASSRFHSRAERVLRLLMDDSIFGSDAVVEVIITAFQRLCENIEPKELDLMW
KCLYEKITECVTNGCILHLSRLLSLLISIVQIHNGQIVYDYQSLLEHVGLLVQRFVVPSD
LVKAEDHQEEVVDKVLELIVCILNGLHSSNDMSAISSCSLQWAPVFKLRNSSLLTFIREL
LQKDPCIVDIFRVNILSALNDMVETSEEVIYLLLSFCEIMEAKAQGSNFLVGTFGKVFPK
IQSCLQEAVSDWIREIKEIVRVDPSSTHIHETKLALLWGIIRCYPQLIDIQKKSSCLMDL
IDALNQLLMMEVGCIAGVPNQTWQCLIGAALSSYNKSHLGKESDSEETSKFLHLAKRYRS
SLPVLSAVADYLDFVYGPTSEAVNSNRMYHQELAGEKVVDAVSIFSDNLRHSNKEIRFST
LRILCHYQPLGSVDSTNDQPAAKKMRTEVSQNSLVESQGINVIQLLLSIEETPLSISTSR
KVILLISKIQMGLSAGRLPDAYAPLVLNGIIGILNNRFSHLWNPAIECLAVLMSQHFGLV
GDRFVSYLEQYQSIFHTSNEVYEGNSKAYESSDLVKHFNSFVYPGSESIPCATVLSLLLQ
SLQKIPIVIESRSREFVPLFLKFLGYDCNVLASVGIFNSHACKGKEWKGVLKEWLNLLKV
MRNPRSFYQSQFLKEVLQNRLLDENDAEIQMKVLDCLLIWKDDFLLPYDQHLKKLISSKY
LREELTTWSLSKESNLIEDQHRAYLVPIVIRLLMPKVRNLKTLASRKNASINHRKAVLGF
IAQLDVEELPLFFALLIKPLQIISQEADSTACWLWTSPENFMDQFQAFNFLKYFTVDNII
ALSWKKRYGFLHVIEDVLGVFDELHLRPFLDLLMGCIVRLLGSCASNIDVAKCNGFSSLE
DHSSADLTLLEKDGAPTNHVLTSSAMKQFKDLRSLCLKVISFVLNKYEDHEFGCEFWDLF
FASVKNLVDSFKQEGSSSEKPSSLFSCFVAMSRSHRLVSLLSRETNLVPDIFSILSVKSA
SEAIVSCVLMFVENLLNLDSELDDKDDTAKRVLLPNLEALICSLHCLFLSDSATKRKLVK
CPGERDIRIFKLLSKYIKDPLLASKFVDILLPFLAKRAQNSDLCSEAVQVFRDIIPVLGS
DSTKTILNAVSPLLTSVELDMRLSICDLLDSLAEVDPSILLVAKLVRDLNATSAAEMGGL
DYDTIVNAYEKICVDFFYTIHEDHVLLILSHCVYDMSSEDLILRHSAFRSMCSFIEFSAL
VISQEGKGHQEVIAKMITSDDGCWXRASIQRITNKFLLKHVGNTLSRETNIKKEWIDLLR
EMVLKLPEVANLNSLGMLCSNDAEVDFFNNIIHLQRHRRARALLRFKNVISTSNMSEGII
NRVFVPLFFNILFDVQDGKGEHVRGACIEALAAISGHAEWKSYYALLVRCLREITLKPDK
QKLLLRLTCSILDQFHFLEISKSQEGNDSFVNDSDSVTIGSGSSAILHKCSSFNIATEIQ
TCLHKTVLPKIQKLLNSEPDKVSININLAALKLLKLLPGDVMDSLLSSIIHRIANFLKNR
LESIRDEARSALAACLKELGLEYLQFVLRVLRATLKRGFEMHVLGYTLNFILSKSLLIPV
IGKLDYCLGDLLSIVENDILGDVAEEKEVGKIASKMKETKTRMSFKTLELIAQSITFKTH
ALKLLSPVTTHLQKQMTPKVKTELERMLNHIAVGIERNPSVDQTDLFIFVYGLIEDGIKD
GNGQGEQSLVVEARKNPRKDMSGKRITSGRVVNVSSHLIIVFALRILHKRIRSLKRDKID
EHVLSMLDPFVKLLGNCLGSRYEDILSASLSCLTPLVRLPLQSLESQADKIKVAVLDIAQ
GLVSSSSPLMQSCLRLLAVLLRSSKITLSSAQLHLLIQFPLFVDLERNPSSLALSLLKAI
VNRKLVVPEIYDLVTQVGELMVTSQVDSIRKKSSQILLQFLLGYQLSVKRLQQHLAFLLS
NLRYEHSTGRESVLEMIHAIIVKFPKKNVDEQSLTLFTHLVICLSNDHDNKVRSMTGAAI
KKLIGCVSPHSLHSILDYTLSWYSYSEETQKLRSAAAQVLGLSVEVMKKGFQRYVNKVLP
VTRKILQSAVNVVTNRQLDFSEETAVTSWRETYYSLVMLEKMLHQFHDLFFESDLEDIWE
AICELLLHPHXWLHHISSRLISLYFANVIDASRENQEKSXGTYFLMKPSRLFIIAVSLCC
QLKTPFNDDAASNLITQNLCSQYESAFFNGQMEYIDSPNFWSSLEEHEQGRFLXAFQLLD
SRKGRSVYFSLHLVIKRIYHSKDIRYLIISYLLKRMGKIALQKDAIQMKIVFNSFEKISS
QISLDDCLHYAYEILLPLYKVCEGFAGKVIPDDIKQLAQEVCETLRKVLGIQSFVQIYSE
IRKNLKAKRDKRKQEEKIMAVVNPMRNAKRKLRIAAKHRANKKRKIMTMKMGRWMNNKKP
RTM
NT seq
8112 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacgtcgcaagctcaggcagtgaagtctctcaacaaatccccaggacgacgc
cgttttgttttcaagaatttttctcagagagtagaggagattgaaatcgatgtgtttcga
agccttaataaagttaaggctgagccttcagaagggtcttcctttttccgtgactgcctc
acagaatggagggaattgaatactgcagaggatttcatttcgttttatgaggaaatgttg
cccttggtacagacattacccttgattatattacagaaggagttaattttctcgaaactt
atcccccgattacaaatgagtgcaaggctatctcttgagcctattcttaggttacttgca
gctctatctagagatctcctggttgattttataccctttatgccaaggattgctgattct
ttagtgtctctcctggaaactggtgctgatagggaaccagagataattgagcagattttt
acgtcgtggtcatatattatgatgtacttgcaaaaatatctaatacgtgaccttgtttat
gtgctcaaggttacattaaaactacgatattatcccaaggagtatgtccaagaatttatg
gctgaggcaatatcattcttgtttaggaatgcaccagctgagcagctacaggaagggatt
aaaaagatcatgaccgaagtcataaagaaaccattgcctgccaggaaatgtggcatcagt
gctttacttttttatgttatgagaggggcctcatcaaggttccactcaagagcagagcga
gtattgcggttattgatggacgattcaatatttggttcagatgcggttgttgaagttata
attactgcctttcaaagactatgtgagaacatagagccaaaggagttggatttgatgtgg
aaatgcttatatgagaaaattactgagtgtgtaactaatggatgcattttgcatttaagt
cgtctattgtcgctgcttatttccatcgttcagatccacaatggacaaatagtttatgat
taccaatcattacttgagcatgtgggattgcttgtgcaaaggtttgtggtgccttctgac
ttggtgaaggcagaggatcatcaagaagaagttgttgataaggttctagaattgattgta
tgcattctcaatgggctccatagttctaatgatatgtcagctatctcaagttgttcattg
caatgggctcctgtatttaagttaaggaactcaagtttgttgacttttattagagaacta
ctacagaaggacccttgcatagtagatatcttcagagttaacatcttaagtgctttgaat
gatatggtagagacttcggaagaagttatttatctattactgtccttctgtgaaataatg
gaagcaaaggcgcaagggtccaactttttagttggcacatttggaaaagtatttccaaag
attcagagttgtttgcaggaggctgtctctgattggataagggaaataaaagaaattgtg
cgcgttgatccatcatcaactcatattcatgagactaagttggctctgctgtggggaatc
attagatgctatcctcaattgattgatatccaaaagaaatcatcctgtttaatggatttg
atagatgcactcaatcagctactgatgatggaagttggctgcatagctggtgttcctaac
caaacttggcaatgcctaattggggctgctttgagttcttacaacaagtcacatcttggt
aaagaatctgactctgaagaaacgagcaaatttttgcatcttgcgaaaagatacagatct
tctttaccagtattgtctgctgttgctgattatttggattttgtgtatgggcctacatcg
gaagctgtcaacagcaatcgaatgtatcatcaagaacttgctggcgagaaggttgtggat
gcagtaagcatattttctgataatttgcgccactcaaacaaggagattcgcttctcaact
cttagaatattgtgtcactatcaacctctgggctctgtggattctacaaatgatcaaccg
gctgcaaagaaaatgagaactgaagtctctcaaaattcccttgtggaaagtcagggtatt
aatgttattcagttgcttttgtctattgaggaaactcctctttcaatttctaccagcagg
aaagttatcctattgatttctaaaatacaaatgggcctctcagctggcagattacctgat
gcctatgcgccccttgttttgaatgggataattggcatattgaataaccgatttagccat
ctttggaatccagcaatagagtgccttgcagtcttgatgagccaacattttggacttgta
ggggatagatttgtttcttatcttgagcaataccaatccatatttcatacatctaatgaa
gtatatgaagggaattctaaagcttacgagtcaagtgatcttgtcaagcattttaattcg
tttgtatatccgggctctgagagcattccttgtgcaacagtattatccttgctgctccaa
tcgttacaaaagattccaattgttattgaatctcggtctcgagagtttgtacctttgttc
ttaaagtttcttggctatgattgcaatgttcttgcaagcgtgggaatcttcaattcacat
gcttgtaaaggcaaagagtggaaaggtgtccttaaagaatggttgaacttgctgaaagta
atgcggaaccctaggtctttttatcagagtcaatttcttaaagaggttctgcaaaatagg
cttttggatgaaaatgatgctgaaatacagatgaaggttcttgattgcctcttgatttgg
aaggatgattttttgctcccatatgatcagcatctgaaaaagttgataagctccaaatat
ttgcgagaagaactaacaacatggagtttatccaaagaatctaatctaattgaagaccaa
cacagagcttatctggttcctatagttattcgtcttctaatgccaaaagtcagaaatttg
aagacacttgcctctagaaagaatgcaagcattaatcaccgaaaggcagtcctgggtttc
attgctcaacttgatgttgaggagcttcctcttttctttgcattgttaataaagccactg
caaattatttcacaagaagctgatagtactgcttgttggctttggacttcacctgaaaat
tttatggatcaatttcaggcttttaatttcttgaagtatttcaccgtggataatataata
gctctgtcttggaagaaaagatatggttttctgcatgtgattgaagatgttctaggagtt
tttgatgaattgcatcttagaccttttcttgatctattaatggggtgtattgttcggcta
ttgggaagctgtgcatcaaatattgacgttgcaaagtgcaatggattttcctcacttgaa
gatcattctagtgctgacctaactttacttgagaaagacggtgctccaacaaatcacgtc
ctgactagcagtgctatgaagcagttcaaagatttaaggtctctatgcctgaaagtaatt
tcttttgtcctcaataagtatgaagatcatgaattcggttgtgagttctgggacctgttc
tttgcatctgtgaaaaatttagttgacagttttaaacaggagggttccagtagtgagaag
ccaagttcattattctcttgctttgttgctatgagtagaagccacaggcttgtatcactg
ctaagtagagaaacaaatcttgttccggatatattttcaatacttagtgtcaagtcagct
tctgaagctattgtatcatgtgttcttatgttcgttgagaacttgttgaatcttgatagt
gagttggatgataaagatgatactgcaaaaagagttctacttcctaaccttgaggcactt
atctgcagcttgcattgccttttcttaagtgatagtgccaccaagaggaaattggtcaaa
tgtcctggggagagagacataagaattttcaaattattatcaaagtatataaaggatcca
ttgctagcaagcaaatttgtagatatcttgctcccatttttagcaaagagagctcaaaat
tctgatctttgttctgaagctgtgcaagtctttcgagatattataccagtgttagggagc
gacagtactaaaacaattttgaatgcagtttctccactacttacttctgttgaactggat
atgcgtttatctatttgtgatcttcttgattctcttgctgaagtggatccttctatcctg
ttagtggcaaaacttgttcgtgacttgaatgcaacctctgctgcagaaatgggtggactt
gattatgacactatagtcaatgcttatgaaaagatttgtgtcgatttcttctatactatt
cacgaggatcatgtgttgctcattttatcacattgtgtgtatgatatgtcatctgaagac
ttgatcttaaggcatagtgcttttaggtcaatgtgttcgtttattgaattttctgcacta
gttatcagccaagaaggaaaaggtcatcaagaagtaattgctaagatgattacttctgat
gatggttgttggnacagagcatctattcagcgtataacaaacaaatttcttttgaagcat
gtggggaatacattgagtagagaaactaatataaaaaaggaatggatagatttactacga
gaaatggtgttgaaacttccagaagtagcaaatcttaattcattggggatgctgtgcagt
aatgatgctgaagtagattttttcaataatattattcatttgcagaggcataggagagca
agggcattattacgttttaagaatgttatcagtactagcaatatgtcggagggaatcata
aatagggtttttgtgccgctcttttttaatattttgttcgatgtacaagacggaaaagga
gaacatgttagaggtgcatgcatagaggcccttgcagcaatttctggtcatgcagaatgg
aagtcatactatgcattattagttagatgccttcgagagattactctgaaaccggacaag
caaaagctcttattgagactaacttgctctattcttgaccaatttcattttctagaaatt
tctaagagccaagaaggcaatgactcttttgtgaatgattctgattccgtgaccattggt
agtggttcttcagccattttgcacaagtgtagttcttttaatattgcaactgagatacag
acgtgcctgcataaaactgttctcccgaagatacagaagctactgaattctgagcctgat
aaggtcagcattaacatcaatcttgctgcactgaagctactaaagttgcttcctggggat
gtgatggactcactcctttcaagtatcattcatcgcattgcaaacttcttaaagaatcgt
ttggaaagtatacgtgatgaagctagatcagctttggctgcttgtttgaaggagcttggg
ctggaatacctgcagtttgtgctcagggttttgcgagcgaccttgaaacgaggatttgaa
atgcatgtattgggatacactctcaatttcatcttgtccaagtctcttttaatacctgtc
attgggaagttggattactgtttgggagatctcctttccatagtagaaaatgacatactg
ggagatgttgccgaagaaaaagaagtgggaaagattgcttcaaaaatgaaagaaacaaag
acacgaatgtcttttaaaacactggaattgattgcccagagtataacattcaaaacccat
gccttgaagcttctttcacctgttacaactcatttgcagaagcagatgacaccaaaagtc
aaaacagaattggaaaggatgttgaatcacatagctgttggtattgaacgtaatccatct
gtagatcagactgacctattcatatttgtgtatggcctcattgaagatgggattaaagat
ggaaatggtcaaggtgaacaatcattggttgtagaggcaagaaaaaatcctagaaaagac
atgagtggaaaaagaataacttcaggccgagttgtgaatgtatcttcacatcttattatt
gtgtttgctctcaggatattgcataaacgaataagaagtttgaaacgggataaaattgat
gaacatgtgttatcaatgttggatccttttgtcaaacttctaggcaactgcttaggttcc
aggtatgaagatattttatctgcatcccttagttgccttactccattggtaagactgcct
ttacaatcccttgagtctcaagctgataaaataaaggtggcagtcttggatattgcacaa
ggtttggtatcttctagcagtcctctaatgcagtcatgtctaagattgctagctgtgctt
ctgcgaagtagcaaaattactctttcatcagctcagttacatctgttaattcagtttccc
ctgtttgttgatcttgaaagaaatccttctagccttgccctttctttgctcaaggcaatt
gttaatcgcaagctagttgttcccgagatatatgatcttgtaactcaagttggggaattg
atggtgacaagtcaagtggattcaattcgaaagaaatctagtcaaattttgttgcaattt
ttacttggttatcagctttctgtaaaacgtttgcaacagcatctagcttttctgctttca
aatctaagatatgagcattcaactgggagagaatctgtgcttgaaatgattcatgcaatc
atagtcaaatttccaaaaaaaaatgttgatgagcaatcactgacattatttacacatctg
gtgatttgcttatccaacgatcatgataataaagttcggtccatgactggtgctgctata
aagaaactcattgggtgtgtaagcccacattcacttcattccattctagactacacatta
tcatggtattcatattcggaagagacacagaaactgcggagtgctgctgcccaggtctta
ggattatcagttgaggttatgaagaaaggatttcaaagatatgtcaataaagtattgcct
gtgactagaaaaattttgcaatcagccgtcaatgttgtcactaataggcaactagatttt
tctgaggaaactgctgttacttcctggagagagacatattactcgcttgtcatgttggaa
aagatgctgcatcagttccatgatttgttctttgaaagtgatcttgaggatatctgggaa
gcaatctgtgagctgcttttgcacccacatnngtggttacaccacatatcaagtcgcctt
atatccttgtactttgccaatgtaatagatgctagcagagaaaatcaagaaaaatcanca
gggacttattttcttatgaaaccaagtagactttttattatagctgtttccctctgctgc
caattgaagacaccattcaatgatgatgctgccagcaacctcataacacaaaacttgtgt
tcacaatatgagagtgcattctttaatggacaaatggagtacatagattctccaaatttc
tggtctagccttgaagagcatgagcaaggccgatttctanaagctttccaattgcttgat
tcaagaaaagggagaagcgtatatttctctcttcatctggtgatcaaaaggatataccac
tccaaagatattcggtatttgatcatttcttatctgcttaaaagaatgggaaagattgcc
cttcagaaggatgctattcagatgaaaattgtattcaatagttttgaaaaaatttcatca
caaatcagtctggacgattgcctgcattatgcatatgaaatccttctacccctatataaa
gtttgtgaagggtttgctgggaaagtaatccccgatgatattaagcaattggcgcaggaa
gtttgtgaaactctaaggaaagttctaggcatccagagctttgtacaaatttacagcgag
atcaggaagaatctcaaggcgaaaagggataagaggaaacaagaagaaaagatcatggct
gttgtcaatccaatgcgcaatgccaagaggaagttgagaattgctgctaagcatcgtgct
aacaagaaaaggaagataatgacaatgaaaatggggagatggatgaacaacaagaaacca
aggacgatgtaa
DBGET
integrated database retrieval system
