Quercus suber (cork oak): 112006607
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Entry
112006607 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: protein TORMOZ EMBRYO DEFECTIVE
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112006607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
qsu03009
]
112006607
Ribosome biogenesis [BR:
qsu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
112006607
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_WDR3_2nd
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
Utp13
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_Nup120_160
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR41
NBCH_WD40
Beta-prop_Aladin
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_WDR75_2nd
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
112006607
NCBI-ProteinID:
XP_065625842
LinkDB
All DBs
Position
Unknown
AA seq
590 aa
AA seq
DB search
MHSEPSTSSNSYRNLIDVAGVNLWDLHDCGFKKTVLTYEVLEAVCTIRSGSPFASSLALF
SQQSGMKASGSSEIHFITVGERGIVRIWNSERAVCLFEQKSSDITDSSDMDRGFTSAVML
PFDQGLLCVTADQQFLFYSPVEHPEEMFKLILSRRLVGYNEEIVDMKFXRXREQFLAVAT
NLEQVRVYDLTAMSCSYVLAGHTETVLCVDTCVSSSGRTLIVTGSKDNNVRLWESESRCC
VGVGVGHMGAVGAVAFSKKQKNFFVSGSSDRTLKVWSLDGLLDGVEQPLSLKAKAVVAAH
DKDINCLAVAPNDSLVCSVLRSHCLHWKLPDLVSVVVLKGHKRELVGRVSPVEQCVITAS
GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGTQFVSCGADGLVKLWTVKTNECIAT
YDKHEDKVWALAIGKKTEMLATGGSDAVINLWYDCTSDDKEEAFRKEEEGVLKGQELENA
VSDADYTKAIQIAFELRRPHKLFELFAELFRKREAENQMDKALNAIGKGEFRLLFEYVRE
WNTKPKLCHVAQLXAFQSFHILPPTEIIEVLVFLSIPLLYSISKYCVSVG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcactcggaaccttccacttcaagcaatagttacaggaaccttattgatgttgcaggt
gtaaacttgtgggatcttcatgactgtggtttcaaaaagactgtgttaacatatgaggta
cttgaagctgtctgtacaattcgctctggaagcccctttgcttcaagcctggctttattc
tctcagcaaagtgggatgaaagcaagtggttcatcagaaattcattttatcacagttggt
gaacgtgggattgtaagaatatggaactctgaaagggcagtttgcttgtttgagcaaaag
tcatcggatattactgacagctcagacatggataggggcttcacttctgcagttatgctg
ccttttgatcaagggttgctttgtgtgactgctgatcagcagtttcttttctattcgcca
gtagaacacccagaagagatgtttaaattaatcctaagcagaagacttgtaggatacaat
gaagagattgtggatatgaaatttnntaggtgaagagaacagtttctggcagttgccaca
aatcttgaacaggtacgagtgtatgacctaacggccatgtcatgttcttatgtattggct
ggtcatactgaaactgttctatgcgttgacacctgtgtatcaagttctggaagaacactt
attgtaacaggaagtaaggataacaatgttagactgtgggaatcagaaagcagatgttgc
gttggagttggtgtaggtcatatgggagctgttggagccgtagctttctcaaagaagcag
aagaacttctttgttagtggtagtagtgatcgtacactaaaagtgtggagtttggacggt
ctcttagatggggtcgaacaaccacttagtttaaaagcaaaggcggttgtagcggctcat
gataaggatattaattgtctagctgttgcaccaaatgatagcttagtttgcagtgttctc
agatcgcactgcttgcattggaagcttccagatttggtatctgtagttgtacttaaaggg
cataaaagggaattggtcggtagagtttctcccgttgagcaatgtgtcataactgcatct
ggtgataaaacgataaagatttggtcaatatctgatggttcatgcttgaaaacatttgaa
gggcatacatcaagtgtattaagagcgtcctttcttactcgtgggacccaatttgtttct
tgtggtgctgatggtctggtaaagctatggacagtgaaaaccaatgagtgcattgctaca
tatgataagcatgaggacaaggtttgggcactggctattgggaagaagacagaaatgctt
gctactggtggcagtgatgctgtcattaatttgtggtatgattgtacttctgatgacaaa
gaggaggctttccgtaaagaggaggaaggggttctgaaaggtcaagaattggaaaatgct
gtatcagatgctgactacactaaagcaatccaaatagcatttgaacttcgcaggcctcat
aaactttttgaattgtttgctgaacttttcaggaagagagaggctgaaaatcagatggat
aaagctcttaatgccattggcaagggagagtttcgtttactgtttgaatatgttcgagaa
tggaatacaaagccaaagctctgtcatgttgcacaattgnntgcttttcagagttttcat
atccttcctccaacagagataattgaggtactggtctttttaagtattcctcttctgtat
agcatttcaaaatattgtgtctcagtaggttga
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