Quercus suber (cork oak): 112006841
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Entry
112006841 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112006841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112006841
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112006841
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Agenet
LBR_tudor
ResT-TelK_cat
ALS_ss_C
Motif
Other DBs
NCBI-GeneID:
112006841
NCBI-ProteinID:
XP_023894914
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MAPSRRLSNGRSPIVNQQRQITAFFTKTTSSSPSPSPTLSKQNSKFSSSVPNPNPSSTXN
SSPSPTTPSPFQTRSKNKPLLVISASPLTPNDKRSYGDDVVGKRIRVFWPLDKAWYEGTV
KSFDKVANKHLVQYEDEEEELLDLEKEKFEWVQETLKRFKRLRRGALDSSEAVEIVEEEK
DKAVQRRRGEDGDDSSDEDWGRXEEVMDLDEEEEEDVVKRSKGRRGEKWKRKASEGEKLG
SAKKNKGGFKFSLVEPTSNNAESGKASNELGNALRGDATERFGTREAVKFCFLGEERRDA
KRRRPGDANYDPRTLYLPPDFLKSLSGGQRQWWEFKSKHMDKVLFFKMGKFYEXFEMDAH
IGAKELDLQYMKGEQPHCGFPEKNFSMNLEKLARKGYRVLVVEQTETPEQLELRRKEKGS
KDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVTEGCQRLANQNADRIFGVCVVDVT
TSRIILGQFGDDAECSALCCLLSELRPVEIVKPAKQLSPETERALLRHTRNPLVNDLVPL
LEFWDAEKTVHEFKSSYSRIVEQSVSGSLNETNLDGLQSQVEENGMGWLPDVLSDLVKAG
ENGSYALSALGGTIFYLKQAFLDETLLRFAKFELLPCSGFANIVSKPYMVLDAAALENLE
IFENSRNGDSSGTLYAQLNHCVTSIGKRLLKTWLARPLYHPESIRERQDAVGGLRGVNLA
FALEFRKALSRLPDMERLLARVFASSEANGRNANKVVLYEDAAKKQLQEFISVLRGCESM
AQSCSSLSVILENVESRVLHHLLTLGVGLPNIDSVINHFKDAFDWVEANNSGRIIPHEGV
DLEYDSACKKVKEVESSLTKHLKNQQKLLGDASITYVTIGKEAYLLEVPESLRERIPRDY
ELRSSKKGFFRYWTPSIKKLLGELSQAESEKESMLKSILQRLIGRFCEHHNKWRQLVSAT
AELDVLISLAIASEYYEGPTSRPIILDSSSPDKVPCFSAKSLGHPVLRSDSLGKGTFVPN
EIMIGGSSHPSFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPADSFELSPVDRIFVRM
GAKDHIMAGQSTFLTELSETALMLSSATRNSLVALDELGRGTSTSDGQAIAESVLQHFVH
KVQCRGMFSTHYHRLAVDYQNDHKVLLCHMGCRVGNGVGDVEEVTFLYKLTPGACPKSYG
VNVARLAGKILSILLPLC
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgtcacggcgccttagcaatggccgatccccaatcgtaaaccaacagcgccaa
atcactgccttcttcaccaaaacgacctcgtcttctccttctccatctcccactctttcc
aagcaaaattccaaattttctagttctgtccctaaccctaaccctagctctaccnccaat
tccagtccaagccctacaaccccttctcctttccaaaccaggtccaagaacaagcccctc
ttagtcatctccgcatcaccgttaactcctaacgataagagatcgtacggagatgatgtt
gtggggaagaggattagggttttttggcccttggataaggcgtggtatgaaggcaccgtg
aagtctttcgataaggtagctaacaagcatttggttcagtacgaggatgaagaggaggag
ctattggatttggagaaggagaaatttgagtgggtccaagagaccctcaagagattcaag
cggttgcgtcggggtgctttggattcgagtgaggcggtggagattgttgaggaagagaag
gataaggcggtacagaggcggagaggcgaggatggtgatgattctagtgatgaagattgg
ggaaganatgaggaagttatggatttggatgaggaggaagaagaggatgttgtgaagcgg
tcgaaagggaggcgtggtgagaagtggaaaaggaaagcgagtgagggagagaagttgggg
tctgctaagaagaacaagggaggtttcaagttttcattggtggagcctactagtaataat
gctgaaagtggaaaggcatctaatgaacttggtaatgccttaaggggtgatgccacagag
aggtttggtacgcgtgaagctgtaaagttttgcttccttggggaagaacgcagggacgca
aaaagaaggcgtcctggggatgcaaactatgatccgaggacactttacttgcctcccgat
tttcttaagagtttatcaggtggccagagacaatggtgggagtttaagtcaaagcatatg
gacaaggtgttatttttcaagatgggaaaattttatgaancttttgaaatggatgcacat
ataggagcaaaggaacttgacttgcaatatatgaagggagaacaaccgcattgtggattt
ccagaaaagaacttctcaatgaatttggagaaattggcaagaaagggttatcgggttctt
gttgtagagcagacagaaacccctgaacaactagagcttcgtcgcaaagagaaaggttct
aaagataaggttgtgaaacgtgaaatatgtgcagtggttacaaaaggaacacttactgag
ggagagatgctgtcagcaaatcctgatgcttcttatctaatggcagtgactgaaggctgt
cagagattggcaaaccaaaatgcagaccgcatttttggtgtttgtgtggttgatgttaca
accagcaggattattcttggacagtttggggatgatgcagagtgcagtgccttgtgttgt
ctattgtccgagctaaggccagtggaaattgtaaaacctgctaaacagctcagtcctgaa
acagagagagcgctgctgagacatacaagaaatccattagtgaatgatttggttccactc
ttggaattctgggatgctgagaaaaccgtgcatgaattcaaaagtagctacagccgtatt
gttgaacaatcagtttctggatctttaaatgaaacaaatttggatggtcttcagtctcaa
gtggaggaaaatgggatgggctggctaccagatgttctgtcagatctggtaaaggcaggc
gagaatggcagctatgcactttctgctcttggaggcactatattctatcttaagcaggct
ttcctggatgagacgttacttcgatttgcaaagtttgagttacttccatgctctggtttt
gctaatatcgtctcaaaaccatacatggttcttgatgcagctgccctggagaaccttgag
atttttgagaatagcagaaatggagactcttcagggacgctctatgcccaattgaaccac
tgtgtgacatcaattgggaagaggttgctcaagacttggcttgcaaggcctttatatcat
ccagagtcaattagggaacggcaggatgctgtcggaggtttgcggggagttaatctagct
tttgcacttgaatttagaaaagcactgtccaggctaccagacatggagcggttgcttgca
cgtgtttttgctagcagtgaggctaatggaaggaatgccaacaaagtggttctatatgag
gatgcagcaaaaaaacagctccaagagtttatatcagtgctacgtggttgtgaatcaatg
gctcaatcatgttcttctcttagtgttattttggaaaatgttgaatctagagtccttcat
catttgttaacacttggtgtaggtctccctaacattgattcggttataaatcatttcaag
gatgcttttgattgggtagaagccaataattcaggacgtatcatacctcatgaaggagtt
gatctggagtatgactctgcctgtaaaaaagttaaggaggttgagtctagtttaacaaaa
cacctcaagaatcagcaaaaattacttggagatgcatcaattacatatgtcacaattgga
aaagaggcatatctcttagaagtaccagaaagtttgcgcgagagaattcctcgtgactat
gagttaagatcatctaaaaagggcttcttcaggtattggactccaagtatcaagaagttg
ttgggagagctttcacaagctgagtcagaaaaggaatccatgctgaaaagcattcttcag
aggttgattggacgtttctgtgagcatcataataagtggaggcaattagtttctgctact
gcagagttggatgttttgatcagtctagcaattgcaagtgaatattatgaagggccaaca
agccgaccaattatattagattcttcaagtccggataaagtgccatgcttttctgcaaaa
agtctaggacatcctgttcttagaagtgattctttgggcaagggtacctttgttcccaat
gaaattatgattggtggttctagtcatcctagctttatccttctcactggtcctaacatg
ggggggaaatcaactcttcttcgccaagtttgcttggctgtgattttggcccaggtagga
gcagatgtccctgcagacagttttgagttgtcacctgtggaccgaatctttgttcggatg
ggtgccaaagatcacatcatggcaggccaaagtacatttttaactgaactctcagaaact
gcattaatgctgtcttctgcaactcgtaattcattggtggcattggatgaacttggacgt
ggaacatcaacttcagatgggcaagcgattgctgaatcggttctacaacattttgtccac
aaggtgcagtgtcgaggaatgttttctactcactatcaccgattagctgtagactatcag
aatgatcataaggttttgctgtgtcatatgggatgccgagttgggaatggagttggagat
gtggaagaagttacatttctatacaagttgacacctggtgcatgccctaaaagctatggt
gttaatgttgcacggttagctggtaagattctttctatattattgcctctttgttga
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integrated database retrieval system
