Quercus suber (cork oak): 112007104
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Entry
112007104 CDS
T05868
Name
(RefSeq) DNA damage-binding protein 1a isoform X2
KO
K10610
DNA damage-binding protein 1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03420
Nucleotide excision repair
qsu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112007104
09124 Replication and repair
03420 Nucleotide excision repair
112007104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
qsu04121
]
112007104
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112007104
Ubiquitin system [BR:
qsu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
112007104
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
112007104
TCR (transcription coupled repair) factors
Cul4-CSA complex
112007104
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
112007104
NCBI-ProteinID:
XP_023895175
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MSIWNYVVTAHKPTNVNHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAETSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGANLLIPVPPPLCGVIIIGEETIVYC
SANAFKAIPIRPSITRAYGRVDADGSRYLLGDHTGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAFVYIGSSYGDSQLVKLNLHPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNIEDELEETEIEGFCSQVQTLFCHDAVFNQLVQVTSSSVRLVSSTSRELR
NEWNARPGYSINVATANATQVLLATGGGHLVYLEIGDGVLTEVKHAQLEYEISCLDINPI
GENPNYSQLAAVGMWTDISVRIFSLPDLNLITKEPLGGEIIPRSVLLCVFEGISYLLCAL
GDGHLLNFLLNTSTGELADRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQSRTFAICSLKSNQSSTEDSETHYIRLLDDQTFEFISTYQLDTFEYACSILSCSFSDD
SNVYYCAGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGSVYSLNAFNGKLLAGI
NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVRKNSEGATDEERGRLEVAGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQSNLRKV
IKGVGGLSHEQWRSFNNEKKVVDARNFLDGDLIESFLDLNRSKMDEVSKAMNVTVEELCK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagtatctggaactatgtggttacggctcacaagcccaccaacgtgaaccattcctgc
gtcggcaatttcaccagccctcaagagctcaacctaatcatagcgaaatgcacccgaatc
gaaattcatttacttactcctcagggcttgcagcctatgctggacgtgccaatatatggg
agaattgcaacacttgaactttttcgcccgcatggtgaggcacaagattttctatttatt
gcaacagaaagatacaaattctgcgtgcttcaatgggatgctgagacatctgagcttatc
acaagagcaatgggggatgtttcggatcgtattggtcgtcctacagacaacggtcagatt
ggcataattgatccagattgcagactaattggactccatttatatgatggattgttcaag
gtcattccttttgataataaagggcagcttaaagaagcatttaacattaggctcgaggaa
cttcaagttttggatatcaagtttttgtatggttgttcaaaacctacaattgtggttctt
taccaggataacaaagatgctcgccatgttaaaacgtatgaggttgctcttaaggataaa
gattttgttgagggtccctggtcccagaacaatcttgacaatggagctaatttgctaata
ccagtacctccacctctttgtggcgtcattattattggagaagaaacaattgtctactgc
agtgccaatgcatttaaagcaattccaatcagaccgtccatcacaagagcctatggaaga
gttgatgctgatggttctaggtatttacttggtgatcatactggactacttcacctactt
gttataacccatgagaaagaaaaggttactggactcaaaattgagctcttgggcgaaact
tccattgcatctaccatttcatatctcgataatgcatttgtatatattggctcaagctat
ggagattcacagcttgtaaagttaaatcttcaccctgatgcaaaaggctcatatgtggaa
gtactggaacgatatgtcaatttggggccaattgttgacttttgtgttgtggaccttgag
aggcaaggccaaggtcaggttgtaacttgttctggagcttataaagatggttctcttcgc
atagttcgaaatggaataggaattaatgaacaggcttcagtggaacttcaaggtatcaag
ggaatgtggtcactaagatcttccacagatgatccatttgacacattcctggttgtaagt
tttatcagtgagacacgaattttggcgatgaatattgaggatgagttggaagaaactgag
atagagggcttctgctctcaagtgcagaccctattttgccatgatgctgttttcaaccaa
cttgtacaagtaacttcaagctctgtgagactggtcagttctacatctagagagctacgg
aatgaatggaatgctcgacctggctattcaattaatgttgccactgctaatgccacccag
gttttattggcaactggtggtggccatttggtttatttagaaattggagatggggtcttg
acggaagtaaaacatgcacaattggagtatgagatctcatgccttgacataaaccccatt
ggggagaatcccaactatagtcagctagctgctgttggtatgtggacagatattagtgtg
cggatattttcgcttcctgacctgaatcttatcactaaggagcctttggggggagaaatt
atacctcgctctgttcttctttgtgtctttgaagggatatcttacttgttatgtgccctt
ggagatggacatttattaaattttctattgaacacaagtactggtgaactagcagatagg
aaaaaggtctctcttgggacccagcctattactcttcgcactttctcttccaagaatact
acacatgtatttgccgcgtcagataggccaactgttatctacagtagcaacaagaagcta
ctttacagcaatgttaatttgaaagaagttagccatatgtgcccttttaactctgcagct
tttccagacagccttgcaatcgcaaaagaaggtgaacttactattggcaccattgatgat
atccagaaacttcatatccgctctataccgcttggggagcatgcacgccgtatctgtcat
caggagcagtccaggacctttgctatttgcagtctgaagtcaaaccagtccagtacagaa
gattctgaaacacactatatccgtctgctggatgaccagacctttgagttcatatccact
taccaacttgacacctttgaatatgcttgctccatccttagttgttctttctctgatgat
agtaatgtgtactactgtgctggcactgcatatgtattgccagaagagaatgagccaacc
aagggccgaatattagttttcattgttgaagacgggaagctacagcttattgctgagaag
gaaaccaaaggatctgtttactctctgaatgctttcaacggcaagctgctggctggtatc
aatcaaaaaatccaattgtacaagtggatgctccgggatgatggtactcgagagttacaa
tctgaatgtggacatcacggacacatacttgccctctatgtgcaaactcgtggagatttc
attgttgttggtgacctgatgaaatcaatctccttgttaatctacaagcatgaagaaggt
gccattgaggagcgagcccgtgactataatgcaaattggatgtcagctgttgagattctt
gacgatgacatttaccttggtgctgaaaataacttcaatcttttgactgttcggaagaac
agtgaaggtgccactgatgaggagcgtggccgtcttgaggtagctggcgagtatcacctt
ggagaatttgtcaatcgattccgacatggttcccttgttatgcgcttgccagattctgat
gtgggccagattccaactgtcatttttggtactgttaatggtgtaattggagtcattgct
tcacttcctcatgagcagtatctctttttagagaagcttcagtcgaacctgaggaaggtg
ataaagggtgttggagggttgagccacgagcagtggaggtcatttaacaatgagaagaaa
gtagttgatgccagaaatttcttggatggagatctcatcgagtcattccttgatctcaac
cgtagtaagatggacgaggtttcaaaagcaatgaatgttacagttgaggagctttgcaag
agagttgaagaattgacgagattgcattga
DBGET
integrated database retrieval system
