Quercus suber (cork oak): 112009788
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Entry
112009788 CDS
T05868
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112009788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112009788
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112009788
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_NWD2_C
Cytochrom_D1
Beta-prop_NOL10_N
Ge1_WD40
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
112009788
NCBI-ProteinID:
XP_023897891
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MENNSLEETLQDGKLYRNLNSLIVAHLRDNNLNQAASAVASATMTPLNVEAPPNKLLELF
TKGLAVEKDEMLKGVTSSVLYDLGTSLPAAAYGSIPAPRTATVDFSAVQDAKSSSKSFPK
HETRHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEVAKIKQMMLPDARDGPVRPVIR
TFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKMTAKRAFRVIQDTHNVRSVSFHP
SGDFLLAGTDHQIPHLYDVNTFQCYLSSNVPEIGVNGSINQVRYSSTGGMYVTASKDGAV
RLWDGVTANCVRSIVGAHGAAEVTGANFTKDQRFVLSCGKDSTVKLWEVGTGRLVKQYLG
ATHLQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVARWPSNHIGAPRWLEHSPIE
AAFVSCGTDRSIRFWKEVL
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaacagcttggaggaaactctgcaagatgggaagctctacagaaacctcaat
tctctcattgttgctcatcttagagacaacaatctcaaccaggctgcaagtgcagttgct
tctgcaactatgacaccattgaatgttgaagccccacctaataagcttcttgagctcttt
actaagggtcttgcagtggagaaagatgagatgttaaaaggggtcacttcatctgtattg
tatgatttgggcacttcattgcctgctgctgcatatggctcaatccctgctcctcgcacc
gctactgttgatttcagtgctgtgcaagatgcaaaaagctcatcaaagagttttccgaag
catgagacacgacatctttcagagcacaagaatattgccagatgtgcaagatttagtcct
gatgggaggtttgttgccactggaagtgcagacacatcaataaagctctttgaggttgca
aaaattaagcaaatgatgctgccagatgcaagggatggtcctgtgcgacctgtcatacga
acgttttatgaccatatccaaccaataaatgatttggatttccatcctcaaaatactgtt
ctgatatctggggccaaagaccacactataaagttctttgatttttccaaaatgactgca
aagagagcattcagagttatccaggatacacataatgtgcgttctgtatcttttcatcct
tctggagattttcttttagcaggaactgatcaccaaatcccacatttgtacgatgtcaat
accttccagtgctatctatcttcaaatgtcccagagataggtgttaatggatccataaat
caggttaggtattcatctacaggtggcatgtatgttacagcatctaaagatggtgctgta
cggttatgggatggagtaactgcgaattgtgtgcgatccatagtcggtgcacatggagca
gctgaggtcactggtgcaaattttacaaaggatcaaagatttgttctctcctgtgggaag
gattctactgtgaagctttgggaagttggcactggaagattggtcaaacaatatcttgga
gctacacatctgcagctgcggtgccaggctgttttcaacgacactgaagaatttgtacta
tccatcgatgaaccaagcaatgagattgtaatttgggatgctctgacggcagagaaagta
gcaaggtggccttccaatcatattggtgcaccccgctggcttgagcattcaccaatagag
gcagcctttgtttcctgtggcactgataggtctattcggttctggaaggaagttctctag
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