Quercus suber (cork oak): 112009920
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Entry
112009920 CDS
T05868
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112009920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
112009920
Spliceosome [BR:
qsu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112009920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
PRP4
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_Nup120_160
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_IFT122_1st
Beta-prop_EML
Beta-prop_EIPR1
Motif
Other DBs
NCBI-GeneID:
112009920
NCBI-ProteinID:
XP_065638769
LinkDB
All DBs
Position
Unknown
AA seq
448 aa
AA seq
DB search
MEVDEENPASTSPTEASDLRPDSQTLVSSVHATPLQPIQPIVPPVVVPPTVPIVPPIAPI
PSILPPPVIRPLAPLPVRPPVLRPPISQNGEVRESDSDSDNEDSGPTRTAPGTTGEYEIS
EESRLVRERQEKAIQELMMKRRAKALAVPTNDMAVRTRLRKLGEPMTLFGEREMERRERL
RMIMAKLDAEGQLEKLMKAHEEEEAAATAAKADVEEEIIEYPFYTEGTKTLKDARVEIAR
YSLVQAALRIRREQRKRDDPDEDMDAELDWALGQAANLVLDCSEIGDDRPLSGCSFSRDG
EKLATCSLSGVTKLWKMPNVEKESTLKGHTERATDVAFSPVHDHLATASADRTARLWDTR
GSLLRTFEGHLDRLARISFHPSGKYLGTTSFDKTWRLWDVENGEELLLQEGHSRGACMTD
GRYIATVSHDRKIKLWSSSSKEKAMDVD
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggacgaggaaaacccggcatcaacttctcctacagaggcatctgatttgcgt
cctgatagtcaaacattggtttccagtgttcatgctactccacttcagccaatccaacct
atagttccaccagttgttgtgcctcctactgttcctattgttcctcctattgctccaatt
ccttcaattcttcctcccccggttattcgcccattggcacctctccctgtccgccctcct
gttttaaggccgcccatttcgcaaaatggtgaggtgagagagagtgactcggattcagac
aatgaagattcgggtccaacccgtactgctccaggtacaactggggaatatgagatatct
gaggagagcagactggtgagagagcggcaggaaaaagcaatacaggagcttatgatgaag
cgtcgtgctaaagctcttgctgtgcctactaatgacatggctgtcaggactcgtcttcgc
aagcttggtgaacctatgactctttttggagaaagagagatggaaagacgtgagaggctg
cggatgattatggcaaaactggatgctgaagggcagttggagaaactgatgaaagctcat
gaggaggaagaggctgcagctactgctgcaaaagcagatgttgaggaagaaattattgaa
tatcccttttatacagaagggacaaagactcttaaggatgctagagttgagattgcaagg
tactctcttgtgcaggcagctttgcgtattagacgtgagcaaaggaaaagggatgatccg
gatgaagatatggatgcagaattggattgggctctggggcaggcagcgaatttggtgctt
gattgcagtgagattggggatgaccggccactctctggttgttctttctcacgagatgga
gaaaagttggctacctgttctttaagtggcgttactaagttgtggaaaatgcctaatgtt
gaaaaggaatctacactgaagggacacacagagcgtgctactgatgtcgcattttctcct
gtgcatgaccatctagctactgcctctgctgaccgtactgcaaggttgtgggacactaga
ggatctttgttgaggacatttgagggccatctggaccgccttgcacgcatttccttccat
ccttcagggaagtacttgggcactactagctttgacaagacttggagattatgggatgta
gaaaatggggaggagttgcttcttcaggaaggtcacagtagaggggcatgtatgacagat
gggcgttatatagcaactgtatcacatgatcggaaaattaagctttggtccagcagtagc
aaggagaaggctatggatgtggactag
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