KEGG   Quercus suber (cork oak): 112011615
Entry
112011615         CDS       T05868                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112011615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:qsu03021]
    112011615
Enzymes [BR:qsu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     112011615
Transcription machinery [BR:qsu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     112011615
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 112011615
NCBI-ProteinID: XP_023899750
LinkDB
Position
Unknown
AA seq 1193 aa
MGASSDAKEEIGMSSKGEAYSNGVEMDTDDDEFLESTSIHELGEKFLKIFCKKAAVSFFN
EYGLISHQINSYNDFIKNGIQRAFDSFGEIIVEPGFDPSKKGEGEWRYASVRFGKVTLDP
PIFWGGEGNVKEFNMLPRHARLQNMTYSARMKVNIDVQVYTQKLVRSDKFKTGKDQFVDR
EILSEENRDIFFGRIPVMVKSDLCYMKGAENADCDFDHGGYFLIKGAEKTFIAQEQTSMR
RLWVLNNQGWTVAYKSEVKKHRLIVKLVGVPKVEDIKGGEQVLTVYFLSTEIPIWILFFA
LGVSSDREVIDLIDYDSEDASILNILFASIHDANENCGGFRRGKAALNFVEKCVKNTKFP
PGEAIEECINMYLFPSLQSSKQKARLLGYMVKCLLQAYNGQRKSDNRDDFRNKRFDLAGE
LLERELKVHIAHARRRMQKALQRDLYGDRDIRQIEHYLDASIITNGLSRAFSTGAWSHPF
KRMERISGVVATLGRTNPLQTMAEMRRTRQQVQYTGKVGDARYPHPSHWGRVCFLSTPDG
ENCGLVKNLAITGLVSTNILEPITSKLFDCGLEELGDDAPLGKKYKVFLNGEWVGVCTDS
ITFVQELRYKRRRKKLPHQVEIKRDEQHEEIRIYSDAGRILRPLLVVENLGKIKGDKGEN
YTFQSLLDKGIIDLIGTEEEEDCCTAWGIKYLFMEKGGKSSDKYTHCELDMSFLLGLSCG
LVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMTSDCLG
KPGYPLGHHGMLPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNKASLERGMFRSEHIRSYK
AEVDNKDSLEKKRKPEDFVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESG
SDHSIKLKHTERGMVQKVLLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE
SQENFPFTIQGIVPDVVINPHAFPSRQTPGQLLEAALGKGIACGGSMRYATPFSTVSVDA
ITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPL
TRQPVADRKRFGGIKFGEMERDCLIAHGASGNLHERLFTLSDSSQMHICQKCKNVANVIQ
RTVQGGRKIRGPYCRVCESVDDIVKVNVPYGAKLLCQELFSMGISLKFETRLC
NT seq 3582 nt   +upstreamnt  +downstreamnt
atgggggcgtcatcggatgccaaggaagaaataggcatgagtagtaagggtgaagcgtat
tcaaatggggtggagatggataccgatgatgatgaattcctcgagtcgactagcatacat
gagttgggtgaaaagtttctgaaaattttttgtaagaaggcggcagtttcattcttcaat
gagtatggtttgataagtcaccaaatcaactcgtacaatgacttcatcaagaatggcatc
cagagggcctttgactcttttggtgagatcatagttgagcctggattcgacccatcgaag
aagggggagggtgagtggcgctatgcctcggttaggtttgggaaggtgacccttgatccg
ccgatcttttggggtggtgaaggaaatgtgaaggagtttaatatgcttcctaggcatgcc
cggcttcagaacatgacatactcagcgaggatgaaagtgaatatcgatgttcaggtatac
acacagaaactagtcagaagtgacaagtttaaaaccgggaaggatcagtttgttgatagg
gagatcctaagtgaagaaaacagggatatatttttcggaaggattcctgtgatggtgaag
tctgacctgtgctacatgaaaggagctgagaatgccgattgtgatttcgatcatggaggc
tactttttaattaagggtgcagagaagacatttattgcacaagagcagactagtatgagg
aggctttgggttttgaacaatcaaggttggactgttgcatacaagtctgaagtgaagaag
cacaggttaattgtgaagctagtgggggttcctaaagttgaagatattaaaggaggagag
caagttcttactgtatatttcttgtcaacagaaatccctatatggatattgttttttgct
cttggggtatcatcagacagagaagtcatagatcttattgattatgacagtgaagatgcc
agcatattgaatattctatttgcctcaattcatgatgccaatgagaactgtgggggcttc
cggagagggaaggcagctctaaattttgtagaaaaatgcgtaaagaacaccaaatttcct
cctggggaagctattgaagagtgcattaacatgtatctgtttcccagtctccaaagctcc
aagcaaaaggctcgtcttcttgggtatatggtgaagtgcctcttacaggcttataatggc
caaagaaaatctgataacagggatgattttagaaacaaaaggtttgacttggctggtgag
ctgcttgagcgagagctgaaagtgcatattgcacatgcacggaggcgaatgcagaaggct
ctgcagagagacctttatggagatcgtgatatacgtcaaattgaacactacctggatgct
tccataatcaccaatggcctttcaagagccttctcaactggtgcatggtctcatcctttc
aagaggatggaaaggatttctggtgtggtggcaacactagggcgaacaaacccattgcag
acgatggctgaaatgaggagaacacgccagcaggttcagtacacagggaaggttggagat
gccagatatccacatccttctcactgggggagggtatgttttctctctactccagatggt
gaaaattgtgggcttgtaaaaaatttggccatcaccggactagtaagcacaaacatattg
gagcctataacttccaaattgtttgattgtgggttggaggaattgggggatgatgctcca
ttgggtaaaaagtataaagtatttttgaatggggaatgggttggtgtttgtacagattcg
attacatttgttcaagagcttaggtataagcgacgcaggaagaaattgccacatcaggtg
gagattaaaagagatgaacaacatgaagaaatacggatatattctgatgctggaaggatt
ttacgtccacttttagttgtagagaatttaggaaagattaaaggagataaaggtgaaaat
tacacctttcaatctcttttggacaagggaatcattgatttaatcggaactgaagaagaa
gaagattgttgcactgcatggggcattaaatatctgttcatggaaaaaggagggaagtca
tctgataagtatacccactgtgaacttgacatgtcgtttttattaggtttgagctgtgga
cttgtcccatttgcaaatcatgaccatgcaaggagggtcctttatcaatctcagaagcac
tcttcacaggctattggcttttccactacaaatcctaatattagagtggatactctgtct
caccaattgcattatccgcaaaggccactttttcgtacgatgacttctgattgtcttgga
aaaccaggatatcctcttggtcatcatggaatgctgccaaagcctgaattctacaatggc
cagaatgctattgtggcagtcaatgttcacctagggtacaaccaagaggattccttggtg
atgaacaaggcttctttggagcgtggaatgtttcggtccgagcatatcagaagttataag
gctgaggttgacaacaaggactcattagaaaaaaagcggaagcctgaggattttgtaaac
tttggaaagattcaaagtaagattggacgtgttgacagcctcgacgatgatggtttccct
ttcattggtgcaaacctgcagagtggtgacattgtcatagggaggtgtgcagaatctggg
tctgatcacagtataaaactgaagcacactgaaaggggcatggttcagaaagttttgctg
tcttctaacgatgagggaaagaattttgctgtggtgtccctgagacaggttcgttctcca
tgtcttggagacaagttttcaagcatgcatggtcagaagggtgtcttgggttttttggaa
tctcaagagaacttccccttcacaatacaagggatagttccagatgttgtaataaatcca
catgcatttccttcacgacaaactccgggtcagctcctagaggctgctttagggaaggga
atagcctgtggtggttcaatgagatatgccacccctttctccacagtctctgttgatgcc
atcactgaacagcttcatagggctggattttcaagatggggaaatgagagagtatacaat
ggacgaactggtgaaatggttcgttccctcatatttatgggtccaacattttatcagcgt
ctgactcacatgtctgaggacaaagtaaaatttcgcaacacaggtccagtccatcctctt
acccgacaaccagtggcagatcggaagcggtttggtgggatcaagtttggtgagatggag
cgtgactgccttatagcccatggtgcctcaggaaacttgcatgaacgcctctttacgctc
agtgactcctcccagatgcacatatgccagaaatgcaaaaatgttgcaaatgtgatccaa
cggactgtgcaaggtggccgtaagattaggggtccatattgccgggtttgtgagtcagta
gatgacattgttaaggttaatgtaccttatggggccaagttattgtgccaggagcttttc
agcatgggcataagtctgaagtttgaaacccggctctgttga

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