Quercus suber (cork oak): 112012031
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Entry
112012031 CDS
T05868
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112012031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
112012031
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112012031
Spliceosome [BR:
qsu03041
]
Complex C
Other components
Step II factors
112012031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
ABC_tran
AAA_30
Cas3-like_C_2
nSTAND3
Sigma54_activ_2
TsaE
AAA_16
nSTAND_NTPase5
PhoH
Flavi_DEAD
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
112012031
NCBI-ProteinID:
XP_023900162
LinkDB
All DBs
Position
Unknown
AA seq
1219 aa
AA seq
DB search
MAPAVKDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITELGRNCETVDEFDSKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKESKKESVVDGEKPKYGALAIADTRERAKELDREI
ELEARERRRERGEEEEEAEDRHRGRDRDRDRDRGRGRGRDRDRDRDRDRDRDRDRNRDGE
RDRDRRDRRGYDRDERRRERDVEDDEYDDRRDYRSKGRHGDRHEKHRRDDDVVKHRRDDE
NEDNGGNVDYRRGNKDWRYHSDEPEVYKVYKGRVSRVMDSGCFVQLSDFKGKEGIVHVSQ
IATRRITNAKDVVKRDQEVYVKVISVSNQKMSLSMRDVDQHTGKDLLPLKKGPDDDLNRA
NPSGTREGPTTRTGLSGIRIVEEDDVVPSRRPLKRMSSPEKWEAKQLIASGVLTLADYPT
YDEEGDGLLYQEEGAEEELEIEMNEDEPAFLHGQSRYSMDMSPVKIFKNPEGSLSRAAAL
QSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEW
KKDAYGQSLSFGQRSKLSIQEQRQSLPIYKLKKELVQAVHENQVLVVIGETGSGKTTQVT
QYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK
YMTDGMLLREILIDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSAT
LDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLF
LTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVAT
NIAEASLTIDGIYYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKC
YRLYTESAYRNEMSPTSIPEIQRINLGLTTLTMKAMGINDLLSFDFMDPPSPQALISAME
QLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFY
RPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKSNNFSGPWCFENFVQSRSLRRAQDVR
KQLLTIMDKYKLDVVAAGRNFTKIRKAITAGFFFHASRKDPQEGYRTLVENQPVYIHPSS
ALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADSTKLSKRKRQERIE
PLYDRYHEPNSWRLSKRRA
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgccgttaaagacgacgggttgaagaagctcgaatacctgtcactcgtctcc
aaggtttgctccgaactcgaaacgcatttagggtttggagacaaagttctcgccgagttc
atcaccgagttgggccgaaactgcgagaccgtcgacgaattcgactcgaagctgaaagag
aatggtgccgagatgcccgattactttgtccgtacgcttttgacgattatccacgccatt
cttcctccgaagccgaaggaatcgaagaaggaaagcgttgtggacggtgagaaacctaag
tatggtgccctagcgattgcggatactagggaaagggctaaggagctcgatagggaaatt
gaactggaggcccgagagcggcgtagagagaggggagaagaagaagaagaagcagaagat
aggcatagaggtagagatagggacagagatagagatagaggtagaggtagaggtagagat
agggacagagatagagatagagatagagatcgagatcgagatcgaaacagagatggagaa
agagatcgagatagaagagataggcgtggttacgacagagacgagaggcgtagagaaagg
gatgttgaagatgatgagtatgatgatagaagagattacaggagtaaaggaaggcatggc
gatcgtcatgagaagcataggagagacgatgacgtggtgaagcataggagagacgatgag
aatgaagataatggtggtaatgttgattacaggagaggcaataaggattggcggtaccac
tcggatgagccagaagtttataaagtttacaagggaagggtttcgagagtgatggactct
ggctgctttgtgcaattgagtgattttaaggggaaagagggtatagtccatgtttcacag
attgcaactcggcggattactaatgccaaggatgttgtgaagcgggatcaggaggtttat
gtgaaggtgatctctgtttccaatcagaagatgagtctttcaatgagggatgtcgaccag
catactggtaaggatcttcttccgctgaagaagggtccggatgatgatttgaatagggca
aacccgtctgggacgagggaggggcctactactaggacgggcctttcggggattaggata
gtggaggaggatgatgttgttccttcccgtagaccattgaagaggatgagttcgccagag
aagtgggaggcgaagcagttgattgcttcaggggttttgactcttgcagactatcccact
tatgatgaggaaggggacggattgttatatcaagaagagggtgctgaggaggagcttgag
attgagatgaatgaggatgaaccagcgtttctacacgggcagagcaggtattcgatggat
atgtcacctgttaaaatttttaagaatccagaagggtctttgagtcgtgcagcggcactt
cagtctgcgcttataaaggagcgcagagaagtaagagaacagcagcagagaactatgctg
gactccattcctaaggatttgaatcgtccttgggaagaccctatgccggagacgggtgag
aggcatctagcacaggagcttagaggcgttggtttatcagcatatgatatgccagaatgg
aagaaggatgcatatggacaatcccttagctttgggcagagatcgaagctgtccattcag
gagcagaggcagagcttgccaatctacaaattaaagaaggaactcgttcaggctgtgcat
gaaaatcaggtcctagttgtaattggtgagactggttcgggtaagacaactcaggtaact
caatatctagcagaagctggatacacaacgaagggtaaaattggctgtactcagccccgt
agggtggctgcaatgtctgtggctaagagggttgctgaagagtttggttgtcgtttgggt
gaggaagttggatatgctattcgatttgaagattgtactggtccagatactgttatcaag
tacatgactgatggtatgcttcttagggaaattttgattgatgaaaacctttctcagtac
tctgttgttatgcttgatgaagcacacgagaggactatacacacggatgttctttttgga
ttactcaagcaactagtgaaacggagacccgaccttcgcttgattgtcacatctgcaaca
ctggatgcggagaagttttcagggtatttctttaactgtaatatatttacaattcctggt
agaacttttcctgttgagatactctacaccaaacagccagaaagtgattacctagatgca
tccctaattactgtgctacagatccacttgacagaacctgaaggagacatccttctcttc
ttgactggtcaggaggagattgattttgcgtgccagtctctttatgaaaggatgaagggg
ctaggtaaaaatgttccagaattgattattctaccggtttatagtgcgcttccaagtgaa
atgcagtcaaggatatttgaacctgcacctccggggaagaggaaagtggtagttgctacc
aatattgctgaggcatctttgacaattgatggaatttattatgttattgatcctgggttt
gcaaagcagaatgtgtataacccaaagcaagggcttgattcgctggtcataactcctatt
tcacaagcttcagccaagcagcgagctgggcgtgctgggcgtacaggacctgggaaatgt
tatcgtctctacacagagagtgcataccgcaatgagatgtcccctacttcaattcctgaa
atacagaggataaatcttgggttaactacacttaccatgaaagctatggggataaatgat
cttctgtcttttgatttcatggatccaccttctccccaagctctgatttctgccatggaa
cagctgtacagtctaggagctcttgatgaggaggggcttctgactaaattgggccggaaa
atggcagaatttcctcttgaaccaccattatctaagatgctgcttgccagtgtggacctt
ggatgcagtgatgagattttgactatcattgcaatgattcaaacagggaatatcttctac
aggcctagagagaaacaagcacaagctgatcagaagagggccaagtttttccagccagag
ggagaccatctgacattacttgcagtttatgaggcttggaaaagtaataacttttctggg
ccctggtgttttgagaactttgttcagtctagatccttgaggagggcacaggatgtcaga
aaacagctactcaccatcatggacaaatataaattggacgtagtggctgctgggagaaat
tttacaaagatccgaaaggcgattactgcagggttctttttccatgcatctagaaaggac
ccacaagagggctataggaccctagtagagaaccaaccggtctatatacatccaagcagt
gctcttttccagaggcaacctgactgggtcatctaccatgagctggtgatgactacaaag
gagtacatgcgagaggtcacagttatagatcctaaatggcttgtggagctggcgcctaga
tttttcaaagtagcagattctacaaagttgagcaagcgaaaacgacaagaaaggattgag
ccactttatgacagatatcacgagccgaattcttggcgtttgagtaaacgccgtgcttga
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integrated database retrieval system
