Quercus suber (cork oak): 112012153
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Entry
112012153 CDS
T05868
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112012153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
112012153
Spliceosome [BR:
qsu03041
]
Complex A
U1 snRNP components
U1 related factors
112012153
Complex B
112012153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Crust_neurohorm
Motif
Other DBs
NCBI-GeneID:
112012153
NCBI-ProteinID:
XP_065620683
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MANNSQSSGSQPLRPPSVGSLGPQNFGSSLSMQFRPVPTQQGQPFVPPASQQFRPMGQGF
PSNVPMPAGPSQPLQFSQPIQQLPSRPTLPGHAMPSSQGIQLPYGQTNRPLASMPLQSQQ
SAPALVNHMPGSGIPISSSYTFAPSSFGQHQNNISASSQFQPMSQMPAPVVPVAGQPWMS
SGSQSAAFATPVQQTGQQPPVIPSMDSAVNVPSLNQQSSSDWQEHSSADGRRYYYNKRTK
QSSWEKPPELMTPIEKADASTVWKEYTSPEGRKYYFNKVTKESKWTIPEELKLAREQAQK
AASQGTQSEPSVTSHAPDVAVSSAETSVATISVSSSTTSTLAGVALSPVLVTPVVAVSNP
SPVLSGSSVVSSAQPAVPASAVGNQPPVLAASPVSAVSGSTGVPAASINANPASTSHFEN
LISQDSRGSVDGASVQDIEEAKKGMAVAGKINVTPLEEKMLDDEPLVYASKLEAKNAFKA
LLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKK
AREEFTKMLEESKELTSSIRWSKAVSMFENDERFKAVERTRDREDLFESYMVELERKEKE
KAVEDHRQNVAEYRKFLESCDFIKVNSHWRKVQDRLEDDERCSRLEKLDRLLIFEDYIRD
LEKDEEEQKKVQKEQLRRAERKNRDEFRLLMEGHVATGILTAKTHWHDYCLKVKDLPQYQ
AIASNISGSTPKELFEDVAEELEKQYRDDKTRIKDVMGKLTFLATWTFEDFKEAIIEDVG
SPPISDINLKLVFEESLERAKEKEEKEARKRQRLADDFTKLLYTFKEITASSVWEDCRPL
FEESQEYRSIGEESFRREIFEEYIANLQEKAKEKERKRE
NT seq
2638 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaactctcagtcctctggttcacagccacttcggcctccttcagttggatcc
ttgggtcctcaaaattttggttcatctttatctatgcaatttcggccagttccaacacag
caaggacagccatttgttccaccggcatctcagcagtttcggcctatggggcaggggttt
ccctccaatgttccaatgccagctggtccaagtcagccactacaattttctcaaccaatt
cagcagttaccttcaaggccaactctgcctggtcatgctatgccatcatcacagggtata
caactgccgtatggtcagacaaataggccgcttgcatccatgccactgcagtctcaacaa
agtgcccctgctttagtgaatcatatgcctggttcaggaatacctatctcttcatcatat
acttttgcaccatcttcttttggccagcaccaaaataatattagtgcatcgtcccagttc
cagccaatgtctcaaatgcctgcacctgttgtacctgttgcagggcaaccttggatgtcc
tctggaagtcagagtgcagcatttgcgacaccagtgcagcagactggtcaacaacctcca
gtcattccttctatggattctgcagtaaatgtccctagccttaatcaacagtcctcatct
gattggcaagagcattcatctgcagatgggagaagatattattacaacaagaggacaaaa
cagtctagttgggagaagccaccagaattgatgaccccaattgagaaggctgatgcatca
actgtgtggaaggagtatacctctccagagggaagaaagtattatttcaacaaggttact
aaggaatctaaatggacaattccagaggaattgaagttggctcgtgaacaggctcaaaaa
gcagctagccagggaacacaatcagagccaagtgtgacttctcatgcccccgatgtcgct
gtctcctcagctgaaacatctgtggcaactatctcagttagctccagcactacttcaaca
ttagctggggtggccttgagcccagttctagtgacgcctgtcgttgcagtttctaatcct
tcccctgtgctttctggatcatcagtcgtttctagtgcacagcctgctgtaccagcaagt
gcagttggtaaccaacctcctgtactggctgcttctccagttagtgctgtttcaggaagt
actggagttcctgctgcttcaatcaatgccaacccagcatcaacgagtcattttgaaaac
ctaatatctcaggactctcgaggttctgttgatggagcttctgtacaagatattgaggaa
gcaaaaaaaggaatggcagttgctggaaaaattaatgtgactcctttggaggagaaaatg
cttgatgatgaacctttggtgtatgccagtaagctggaggcaaaaaatgcattcaaagct
ctgctggaatctgttaatgtgcagtctgattggacttgggagcaggcaatgagagagata
attaatgacaaaagatatggtgctctgaaaacacttggcgagcggaagcaagcatttaat
gagtacttaggtcaaaggaagaaactggaagcagaggagaggcgcatgaggcagaaaaaa
gctcgggaagaattcacaaagatgttggaagagtccaaagaactaacatcatccatcaga
tggagcaaagctgtaagtatgtttgaaaatgatgaacgattcaaggctgttgaacgaact
agagaccgggaggatcttttcgaaagctacatggtggaacttgagaggaaggaaaaggaa
aaggccgtggaggatcataggcagaatgtagcagaatacaggaaatttttggaatcctgt
gactttattaaggtaaattcacactggcgaaaagttcaagatcgcttagaggatgatgaa
agatgctcacgtcttgaaaaattggaccgtttgctcatttttgaggactatatacgtgac
ctggagaaggatgaagaggagcaaaagaaggtacaaaaggaacaattgaggcgggctgag
cggaaaaaccgtgatgagtttcgcttgctgatggaaggacatgttgccactggcattctt
actgctaaaactcactggcatgattattgcttaaaggtgaaggatttgcctcaatatcaa
gccattgcatcaaacatctctggttccacaccaaaggagctatttgaggacgttgctgaa
gaattagagaaacagtatcgtgatgacaaaacacgtatcaaggatgtaatggggaagctt
acctttttggcaacatggacgtttgaagactttaaggaggccattattgaagatgttggt
tccccaccaatttcagatatcaacttaaagcttgtgtttgaggagtcattagagagagcc
aaggagaaggaggagaaggaagctagaaagcgtcaacgtcttgccgatgacttcacaaag
ctattatacacattcaaggaaattactgcatcttctgtttgggaagattgcagaccactt
tttgaagagagccaagaatatagatcaattggggaggagagctttaggagggagattttt
gaggaatacattgcaaacttgcaggaaaaggctaaagagaaggagcgcaagcgtgagg
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