KEGG   Quercus suber (cork oak): 112012153
Entry
112012153         CDS       T05868                                 
Name
(RefSeq) pre-mRNA-processing protein 40A
  KO
K12821  pre-mRNA-processing factor 40
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112012153
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:qsu03041]
    112012153
Spliceosome [BR:qsu03041]
 Complex A
  U1 snRNP components
   U1 related factors
    112012153
 Complex B
    112012153
SSDB
Motif
Pfam: FF WW WW_TCERG1 FF_RHG35_4th Crust_neurohorm
Other DBs
NCBI-GeneID: 112012153
NCBI-ProteinID: XP_065620683
LinkDB
Position
Unknown
AA seq 879 aa
MANNSQSSGSQPLRPPSVGSLGPQNFGSSLSMQFRPVPTQQGQPFVPPASQQFRPMGQGF
PSNVPMPAGPSQPLQFSQPIQQLPSRPTLPGHAMPSSQGIQLPYGQTNRPLASMPLQSQQ
SAPALVNHMPGSGIPISSSYTFAPSSFGQHQNNISASSQFQPMSQMPAPVVPVAGQPWMS
SGSQSAAFATPVQQTGQQPPVIPSMDSAVNVPSLNQQSSSDWQEHSSADGRRYYYNKRTK
QSSWEKPPELMTPIEKADASTVWKEYTSPEGRKYYFNKVTKESKWTIPEELKLAREQAQK
AASQGTQSEPSVTSHAPDVAVSSAETSVATISVSSSTTSTLAGVALSPVLVTPVVAVSNP
SPVLSGSSVVSSAQPAVPASAVGNQPPVLAASPVSAVSGSTGVPAASINANPASTSHFEN
LISQDSRGSVDGASVQDIEEAKKGMAVAGKINVTPLEEKMLDDEPLVYASKLEAKNAFKA
LLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKK
AREEFTKMLEESKELTSSIRWSKAVSMFENDERFKAVERTRDREDLFESYMVELERKEKE
KAVEDHRQNVAEYRKFLESCDFIKVNSHWRKVQDRLEDDERCSRLEKLDRLLIFEDYIRD
LEKDEEEQKKVQKEQLRRAERKNRDEFRLLMEGHVATGILTAKTHWHDYCLKVKDLPQYQ
AIASNISGSTPKELFEDVAEELEKQYRDDKTRIKDVMGKLTFLATWTFEDFKEAIIEDVG
SPPISDINLKLVFEESLERAKEKEEKEARKRQRLADDFTKLLYTFKEITASSVWEDCRPL
FEESQEYRSIGEESFRREIFEEYIANLQEKAKEKERKRE
NT seq 2638 nt   +upstreamnt  +downstreamnt
atggccaacaactctcagtcctctggttcacagccacttcggcctccttcagttggatcc
ttgggtcctcaaaattttggttcatctttatctatgcaatttcggccagttccaacacag
caaggacagccatttgttccaccggcatctcagcagtttcggcctatggggcaggggttt
ccctccaatgttccaatgccagctggtccaagtcagccactacaattttctcaaccaatt
cagcagttaccttcaaggccaactctgcctggtcatgctatgccatcatcacagggtata
caactgccgtatggtcagacaaataggccgcttgcatccatgccactgcagtctcaacaa
agtgcccctgctttagtgaatcatatgcctggttcaggaatacctatctcttcatcatat
acttttgcaccatcttcttttggccagcaccaaaataatattagtgcatcgtcccagttc
cagccaatgtctcaaatgcctgcacctgttgtacctgttgcagggcaaccttggatgtcc
tctggaagtcagagtgcagcatttgcgacaccagtgcagcagactggtcaacaacctcca
gtcattccttctatggattctgcagtaaatgtccctagccttaatcaacagtcctcatct
gattggcaagagcattcatctgcagatgggagaagatattattacaacaagaggacaaaa
cagtctagttgggagaagccaccagaattgatgaccccaattgagaaggctgatgcatca
actgtgtggaaggagtatacctctccagagggaagaaagtattatttcaacaaggttact
aaggaatctaaatggacaattccagaggaattgaagttggctcgtgaacaggctcaaaaa
gcagctagccagggaacacaatcagagccaagtgtgacttctcatgcccccgatgtcgct
gtctcctcagctgaaacatctgtggcaactatctcagttagctccagcactacttcaaca
ttagctggggtggccttgagcccagttctagtgacgcctgtcgttgcagtttctaatcct
tcccctgtgctttctggatcatcagtcgtttctagtgcacagcctgctgtaccagcaagt
gcagttggtaaccaacctcctgtactggctgcttctccagttagtgctgtttcaggaagt
actggagttcctgctgcttcaatcaatgccaacccagcatcaacgagtcattttgaaaac
ctaatatctcaggactctcgaggttctgttgatggagcttctgtacaagatattgaggaa
gcaaaaaaaggaatggcagttgctggaaaaattaatgtgactcctttggaggagaaaatg
cttgatgatgaacctttggtgtatgccagtaagctggaggcaaaaaatgcattcaaagct
ctgctggaatctgttaatgtgcagtctgattggacttgggagcaggcaatgagagagata
attaatgacaaaagatatggtgctctgaaaacacttggcgagcggaagcaagcatttaat
gagtacttaggtcaaaggaagaaactggaagcagaggagaggcgcatgaggcagaaaaaa
gctcgggaagaattcacaaagatgttggaagagtccaaagaactaacatcatccatcaga
tggagcaaagctgtaagtatgtttgaaaatgatgaacgattcaaggctgttgaacgaact
agagaccgggaggatcttttcgaaagctacatggtggaacttgagaggaaggaaaaggaa
aaggccgtggaggatcataggcagaatgtagcagaatacaggaaatttttggaatcctgt
gactttattaaggtaaattcacactggcgaaaagttcaagatcgcttagaggatgatgaa
agatgctcacgtcttgaaaaattggaccgtttgctcatttttgaggactatatacgtgac
ctggagaaggatgaagaggagcaaaagaaggtacaaaaggaacaattgaggcgggctgag
cggaaaaaccgtgatgagtttcgcttgctgatggaaggacatgttgccactggcattctt
actgctaaaactcactggcatgattattgcttaaaggtgaaggatttgcctcaatatcaa
gccattgcatcaaacatctctggttccacaccaaaggagctatttgaggacgttgctgaa
gaattagagaaacagtatcgtgatgacaaaacacgtatcaaggatgtaatggggaagctt
acctttttggcaacatggacgtttgaagactttaaggaggccattattgaagatgttggt
tccccaccaatttcagatatcaacttaaagcttgtgtttgaggagtcattagagagagcc
aaggagaaggaggagaaggaagctagaaagcgtcaacgtcttgccgatgacttcacaaag
ctattatacacattcaaggaaattactgcatcttctgtttgggaagattgcagaccactt
tttgaagagagccaagaatatagatcaattggggaggagagctttaggagggagattttt
gaggaatacattgcaaacttgcaggaaaaggctaaagagaaggagcgcaagcgtgagg

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