Quercus suber (cork oak): 112012155
Help
Entry
112012155 CDS
T05868
Name
(RefSeq) uncharacterized protein LOC112012155
KO
K12830
splicing factor 3B subunit 3
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112012155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112012155
03041 Spliceosome [BR:
qsu03041
]
112012155
03036 Chromosome and associated proteins [BR:
qsu03036
]
112012155
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112012155
Spliceosome [BR:
qsu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112012155
Complex B
112012155
Complex C
U2 SnRNP specific factors
112012155
Chromosome and associated proteins [BR:
qsu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112012155
TFTC complex
112012155
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
112012155
NCBI-ProteinID:
XP_023900302
LinkDB
All DBs
Position
Unknown
AA seq
1382 aa
AA seq
DB search
MAVSEEECSSVKSRSSSSASNSATTTHYLAKCVLRGSVVLQVLYGHIRSPTFLDVVFAKE
TSIELVIIAEDGIVQSVCEQPVFGTIKDIAILPWNEKFGAAQSPQMRGKDLLIVISDSGK
LSFLTFCNEMHRFFPVTHVQLSNPGNSRHQPGRMLSVDSSGCFIAASAYQDRLALFSVST
TDGSEIINEKLIYPPENEGDASIAKSVHKNSIRGTIWSMCFITQDSSQLSKEHNPVLAIL
LLRRGAVSNVLLLLGWNIRESAIHVISQFEEAGPLAHDIVEVPHSRGYAFLFRVGDALLM
DLRDAHNPSCVYRTSLNFLPNAVDEHAFVEESCRVHDVDDEGLFNVAACALLELRDYDPM
CIDGDNSNVTSTCKHACSWSWEPENHKNPRMIFCIDTGELFMIEIFFDSDGLKVNLSECL
YKGLSCKALLWVQGGYLAALVEMGDGMVLTLSNGRLHYTSPIQNIAPILDMSVVDSHDEK
HDQMFACCGLAPEGSLRIIRSGINVEKLLRTAPIYQGITGTWTVRMKVNDPYHSFLVLSF
VEETRVLSVGLSFSDVTELVGFQPDVCTLACGLVSDGLLVQIHQNAVRLCLPTNVAHFDG
IPLSSPVCTSWFPDNTSISLGAVGHNMIVVSTSNPCFLLVLGVRSLSAYHYEIYEMQRLR
LQNEISCISVPQKPFEQKQPSSFIPMVNNSAFPLGIDGGRTFIIGTHRPSVEILSFIPDK
GLRVLASGMISLTNTIGTAISGCIPQDVRLILVDRLYILSGLRNGMLLRFEWPDPSKMSS
SEFPRLQSISSLVNIGTALTGIRVPASFSPQFSEANIFEKTNDLPINLQLIAIRRIGITP
VFLVPLSDSLDADLIALSDRPWLLHTARHGLSYTSISFQPSTHVTPVCSIECPKGILFVA
ENSLHLVEMVHSKRLNVQKFHLGGTPRKVLYHSESRLLLVMRTQLSNDVCSSDICCVDPL
SGLVLSSFKLEPRETAKSMELVRVGNEQVLVVGTSLSSGPAIMPNGEAESSKGRLIVLCL
EHVQNSDSGSITFCSKAGSTSQRTSPFREIVGYATEQLSSSSLCSSPDDTSCDGVKLEET
ESWQLRLAYSTTLPGMVCAICTYLDRYFLASAGNYFYVCGFASDNPQRMRRFAGGRTRFM
IMSLTSYFTRIAVGDCRDGILFYSYHEDSKKLEQLYCDPSQRLVADCILMDVDTAVVSDR
KGSIAVLSCSDHLENNASPECNLTVSSAYYMGEIAMSIRKGSYSYKLPADDVLNAIDLSQ
NTIIASTLLGSIIIFIPISREEHELLEAVQARLVVHPLTSPVLGNDHDDFRSRENPVGVP
KILDGDMLTQFLELTSKQQEAILLLPLGSPDTVKSSLKPNLPSPIPVNQVVQLLERVHYA
LN
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcagaggaagagtgttcttccgtcaagtcccgatcgtcttcatcggcctct
aacagcgccaccaccactcactacctcgcaaagtgcgtcctcagaggaagcgttgttctt
caggtcctctacggtcacatccgctccccaacttttctcgatgtcgttttcgccaaggag
acctccatagagttggtaataattgctgaagatggaattgtacaatctgtatgtgagcag
cctgtatttggcacgattaaagatattgccatcctaccctggaacgagaagtttggtgca
gcgcaaagcccacagatgcggggtaaagaccttttgattgttatttctgattcggggaag
ctctcatttctcacattttgcaatgaaatgcacaggtttttcccagtgacacatgttcaa
ctttctaatcctggaaactcaaggcatcagcctggaagaatgctatctgttgattccagt
ggctgtttcattgctgctagtgcatatcaagatcgcttggctttgttttctgtttcaacg
actgatggcagcgaaattattaatgagaaactgatttatcctcctgagaatgaaggggat
gcaagtattgccaaaagcgtccataaaaacagtatacgtggcactatatggagcatgtgc
tttattacacaagattccagtcaactgagtaaggagcataatcctgtactagccattctt
ctacttaggcggggagcagtctcgaatgtactgctgttgttggggtggaatattagagaa
tctgctatacatgttatttctcagtttgaagaagctggacccctagcacatgatattgtt
gaagttcctcactctcgtggatatgcctttttgttcagggttggtgatgctctcttaatg
gatcttagagatgctcacaatccttcttgtgtctatcgaacaagcttaaattttttacct
aatgcagtggatgagcatgcttttgtcgaagaatcatgtagagtacatgatgttgatgat
gaaggtttatttaatgttgctgcttgtgctttgcttgagttgagggattatgatcctatg
tgtatagatggtgacaatagcaatgtgacttcaacctgcaaacatgcgtgctcatggagt
tgggaacccgaaaatcataaaaatccaaggatgattttctgtatagatactggagaactt
ttcatgattgaaatattttttgattctgatggtctcaaagttaatttatcagaatgtctc
tataaaggtctatcatgcaaggcacttttgtgggttcaaggcggatatctggctgcgctt
gtggagatgggggatgggatggtcctgacactgtcaaatggaagactgcattacacaagt
cctattcaaaacattgcaccaatattagatatgtcagttgtggattcccatgatgagaaa
catgatcaaatgtttgcttgctgtggattagcaccagagggatcgttaaggattatacgt
agtggtattaatgtagaaaaactattgaggactgctccgatttatcaaggcataactggt
acttggacagttcgaatgaaagtaaatgatccttatcattccttccttgtgctatcattt
gttgaggagacccgggtactatcggttggattaagtttttctgatgtgactgaattagtt
ggtttccagcctgatgtctgtactttggcatgtggccttgtaagtgatggtttgcttgtc
cagattcaccaaaatgcagttaggctttgtttacccaccaatgttgctcattttgatggt
atccctttgtcctctccagtttgcacatcttggtttccagataatacaagtattagtttg
ggggcagttggacataatatgatagttgtttccacctctaatccatgttttttattggta
cttggggtcagatcgctatcagcttatcattatgaaatatatgaaatgcagcgtttgaga
ttgcaaaatgaaatatcatgcatttctgtacctcaaaaaccttttgagcaaaaacaacca
agttctttcatccctatggtaaataatagtgcctttccattgggaatcgacggcggtaga
acctttattattgggacgcataggccttcagtggaaatattgtcctttatacctgataaa
ggtctaagagttcttgcttcagggatgatttcattaactaataccataggaactgctata
agtggctgcattcctcaagatgtaaggctcatactggttgataggctttatatactatct
ggtttgaggaatggaatgctgcttcgatttgaatggcctgatccctccaaaatgtcttcg
tcagaatttcctagattacaatctattagttctttagtaaatataggtactgctttaaca
ggtattagagtgccagcttcttttagcccacagtttagtgaagcaaatatatttgagaag
acaaatgaccttccaataaatcttcaattgattgccattcgtcgcattggcattacacct
gtattcttggttcccctgagtgattcacttgatgcagatttaattgctcttagtgacaga
ccttggttgttgcatactgcaagacacggcctctcttatacatctatctcatttcaaccg
tcgacacatgtgacccctgtatgttctattgaatgtcctaaaggaatcttattcgttgcg
gagaacagtttacatctggtggagatggtgcacagtaagaggcttaacgtgcagaaattt
catcttgggggcaccccacgaaaggtcctatatcatagtgaaagcaggctattgcttgta
atgagaactcaattgagcaatgatgtgtgttcatccgatatatgttgtgtagatcctttg
agtggtttagtgctatcatcttttaaacttgaacctagagaaacagccaaatccatggaa
ttagtgagggttggaaatgaacaggtcctggtggtcggtactagtctgtcttctggtcca
gccataatgcccaatggtgaagctgagagttccaaaggccgtcttattgtcctctgtcta
gaacatgtgcaaaattcagatagtggatccataacattctgttcaaaggcagggtcaact
tctcaacgaacttcaccatttcgtgaaattgttggatatgccacagaacagctatcaagc
agtagtctctgtagcagcccagatgatactagctgtgatggagtcaaacttgaagagact
gagtcatggcaattgcgattagcttattcaaccacattgcctggaatggtctgcgcaata
tgtacttatcttgatcgttacttcttggcatctgctggtaattatttttacgtatgtggc
tttgcaagtgacaatcctcaaaggatgagaaggtttgctggaggaaggacacgctttatg
ataatgtctttgacttcatattttactagaattgctgttggtgattgccgtgatggtatt
cttttctattcttaccatgaggattccaaaaaactggagcaactttactgtgacccatca
caaagattagttgctgactgtattcttatggatgttgacacggctgttgtttcagatcgt
aaggggagcattgcggttctctcatgttcagatcatttagaaaataatgcaagcccagaa
tgcaacttaacagttagctctgcctattatatgggtgagatagccatgagcatcaggaag
ggatcatattcatataaacttccagctgatgatgtgctgaatgctattgacctgtcacaa
aacactatcattgccagtacactattaggaagcattataatatttattcctatatcaagg
gaggaacatgagctcttagaagctgtccaagctagacttgtggttcatccactgacttct
cctgttttaggaaatgatcatgatgatttccgtagccgtgaaaatccggttggggttcct
aaaatactggatggtgacatgctgactcagttcctggagcttacaagtaagcagcaagag
gccatattgttgttacctcttggttcacctgacacagtaaaatcaagcttgaaaccaaat
ttaccttcacctatcccagtcaatcaggtggtgcaactccttgaacgagttcattatgcc
ttgaattga
DBGET
integrated database retrieval system
