Quercus suber (cork oak): 112012449
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Entry
112012449 CDS
T05868
Name
(RefSeq) uncharacterized protein LOC112012449
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112012449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112012449
03041 Spliceosome [BR:
qsu03041
]
112012449
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112012449
Spliceosome [BR:
qsu03041
]
Complex B
Other components
Prp19-related factors
112012449
Complex C
112012449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_19
NRDE-2
Motif
Other DBs
NCBI-GeneID:
112012449
NCBI-ProteinID:
XP_023900600
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MEKEFYPSQDDLLYEEEVLRNPFSLKLWWRYLIARSDAPFKKRFIIYERALKALPGSYKL
WHAYLRERLDLVRNLPISHSQYKTLNNTFERALVTMHKMPRIWIMYLQTLTHQKLVTQTR
RTFDRALCALPVTQHERVWEPYLIFVSQKGVPIETSLRVYRRYLKYDPSHIEEFIEFLVN
SSLWQEASERLASVLNDDGFYSIKGKTKHRLWLELCDLLTKHANEVSGLNVDAIIRGGIR
KFTDEVGRLWTSLAEYYIRRNLHEKARDVFEEGIMSVVTVRDFSVIFDSYTQFEESMLTF
KIESMSSSDEEDEEEEGEGGKENGVEGKRMDDEDEDEDVRLDVNLSMAKLEKKILNGFWL
HDDKDVDLRIARLDYLINRRPELANSVLLRQNPHNVEQWHRRVKLFEGDPKKQILTYTEA
VRTIDPMKAVGKPHTLWVNFARLYEKHSDLVNARVIFDKAVQVNYKAVDHLASVWCEWAE
MELRHQNFKGALELMRRATAEPSVEVKRRVAADGNEPVQIKLYRSLKLWTFYVDLEESLG
TLESTRTVYERILDLRIATPQIILNYAFLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWV
TYLSKFVKRYGKAKLERARELFEHAVEMAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ
ATKAVPNNEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKS
LGEIDRARAVYVFASQFADPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQT
HFILPEYLMQKDQRLNLDDARDKLKQAGVAEDEMAALERQLAPVVDNGAAKDNNRRVGFV
SAGVESQSEGGIKVTANSEDIELPEESDSDEDDKVEIAQKDVPSAVFGGLVRKRDEADND
AEAQDATATKEKDGDSRLGALERIKRLKKA
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagagttctacccatcccaagacgacctcctctacgaagaagaagtcctccgc
aaccccttcagcctcaagctctggtggcgctacctcatcgctcgatccgacgctcccttc
aagaagcgcttcatcatctacgagcgagctctcaaggctctcccgggcagctacaagcta
tggcacgcctatctccgcgagcgcctcgacctcgttcgaaaccttcccatctctcactcc
caatacaaaaccctcaacaacacgttcgagcgagccctggtcaccatgcacaaaatgcct
cggatttggatcatgtacctccaaaccctaactcaccagaagctcgtcacccagactcgc
cgcactttcgatcgagctctgtgcgccttgccggtcactcagcacgaacgggtttgggag
ccctatttgatcttcgtgagccagaagggcgtcccaattgaaacctcgctcagggtttat
cgcaggtatttgaaatacgacccttctcatattgaagaattcattgaatttttagttaat
tctagtctttggcaagaggcttccgaaagattagcttcggtgttgaatgatgatgggttt
tattcgattaaggggaaaactaagcataggttgtggttagagttgtgtgatttgttaact
aagcatgctaatgaggtttcggggttgaatgtggatgcgattattaggggtgggattagg
aagtttacggatgaggtagggcggttgtggacctcgcttgcagagtattatattaggcgt
aatttgcacgagaaggcgagggatgtgtttgaggaggggattatgagtgtggttactgtt
agagattttagtgtaatttttgactcgtatacgcagtttgaagagagtatgttaacattt
aagatagagagtatgagttcgagtgatgaggaggatgaggaggaggagggagagggtgga
aaagaaaacggtgttgaggggaagagaatggatgatgaagatgaagatgaagatgttcgg
ttagatgtgaatttatcgatggctaagcttgagaagaagattcttaatgggttttggtta
cacgatgataaggatgtggatttgaggatcgctcgattggattatcttataaataggaga
ccggagttggcgaatagtgtgttgttacgacagaatcctcataatgtggaacagtggcat
cgaagggtgaagttgtttgagggtgatcccaagaagcagattttgacttacactgaggca
gtgaggacaattgatcctatgaaagctgtggggaaacctcatacattgtgggttaacttt
gctaggctttatgagaagcacagtgatcttgtcaatgccagagttatattcgataaagca
gttcaagtcaactacaaggctgtggatcatctggctagtgtttggtgtgagtgggcagag
atggaattgaggcatcaaaatttcaaaggagcattagagttgatgaggcgagccacagca
gagccgtcggtggaggtcaaacgaagagtggctgctgatgggaatgaaccagtgcagatt
aagctgtacagatccttgaaactctggaccttctacgtcgacttagaagagagcctgggt
accttggagtccacaaggacagtgtatgagcggatattggatctaagaatagccacgcct
caaattattctcaattatgcatttctattggaggaacataaatactttgaagatgcattc
aaggtatatgaaagaggggtgaagatttttaagtatccacatgtcaaagacatatgggtc
acatacctctcaaagtttgtaaagagatatgggaaggcaaaacttgaacgggcaagagag
ctgtttgagcatgctgttgaaatggcacccgctgatgcagtaaagcctttgtatcttcaa
tatgcaaagctggaggaggattatggtctggccaagcgagctatgaaggtctatgatcaa
gcaactaaggctgttccaaacaatgagaaattgagcatgtatgaaatttatattgctcga
gcagcagagatatttggtgtcccaaaaactagggaaatatacgagcaagcaatagagtcc
ggtcttccagacaaagatgtgaagaccatgtgcttgaagtatgctgagcttgagaagagt
ctaggagaaattgatcgtgctcgtgcagtatatgtatttgcgtcacaatttgcagatcca
cgatctgatgtggatttctggaataagtggcatgagtttgaggtgcaacatggaaatgaa
gacactttcagagaaatgcttcgaattaaaagaagtgtttctgcaagctatagccagaca
cactttatcttgcctgagtatctaatgcaaaaggatcagagattgaaccttgatgatgca
agagacaaattgaaacaggctggggttgctgaagatgaaatggctgctctcgaaaggcag
ttagctcctgtagttgacaatggtgctgctaaagataacaacagaagagttggctttgtc
agtgcaggtgtggaatcacaatctgaaggaggtattaaagttactgcaaatagtgaagac
attgagctaccagaagaaagtgattcagatgaagatgacaaggttgaaatagcccaaaaa
gatgttccttcagctgtcttcggaggcttggttcgtaagagagatgaggccgacaatgat
gcagaagcacaagatgccactgctactaaggagaaggatggtgacagccgccttggtgcc
ctagagagaataaagagactaaagaaagcgtga
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