Quercus suber (cork oak): 112012948
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Entry
112012948 CDS
T05868
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112012948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112012948
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112012948
mRNA degradation factors
5'-3' decay
Decapping complex
112012948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Exo84_C
Motif
Other DBs
NCBI-GeneID:
112012948
NCBI-ProteinID:
XP_023901084
LinkDB
All DBs
Position
Unknown
AA seq
1406 aa
AA seq
DB search
MASSANPNPHHHQQQQPITPFDMQTFFNSIPQSQTPTSPFPPPYSFPPQSAPFLHQQQPQ
QPQQQHQQQQHMPYHHHHPQFLQNQNAPLLHSQRSLSYPTPPLQPPITISTSTSSPSPSP
SPSPYPNSGGARLMALLGNIPSPPSNHDPPPPQPQPPQHHTPPPSPTPTMMGITLPPPLP
LHTAGSGPIRMPSSKLPRGRHLVGEYVVYDVDVRLPGESPPQQLEVTPITKYQSDPQLVV
GRQIAVNKAYICYGLRQGNIRVLNINTALRSLLRGHTQRVTDMAFFAEDVHLLASVGVDG
RVYVWRISEGPDEEDKPQITGKAVVAVQFIGEEAAVHPRVCWHCHKQEILVVGIGRRILR
IDTTKVGKGEVYSAEEPLKCPVDKVIDGVQLVGNHDGEVTDLSMCQWMTTRLVSASVDGT
IKIWEDRKFAPLIVLRPYEGQPVCSATFLTAPHRPDHIILITAGPLNREVKIWSSASDEG
WLLPSESESWKCTQTLELKSSAEPRVEEAFFNQVVALSQAGILLLANAKKNAIYAVHLDY
GPNPAATCMDYMKESTVTMPILSFTGTGDILSHGEHIIQVYCVQTQAIQQYALDLAQCLP
PPLENMGLEKSDSNISREATSVEGFVTLDPSGSKPTEMLSFAGSVPKPTIQVSSSETATA
VRYTISSGSAEAATSKEINSLSTESKAVGAPVTSDVDSVYVTSPPLPLTPRLPRELSGYR
SPTSSFEPPSLSVPVGDQPVNDYSVDRQVDTVHANMSDVSSLDDDSSVLNPRIMFKQPTH
LVTPSELKGNSSSGTTSVLDGKNEGEASIQDVIVSSDATNAEVEVKVVGETRSMQNAEFG
SQGDPQNLLSENKEKYFCSQASDLGFEMARECSALSAETYIVEEARQVGVNEIEALAQPS
NADEDEVQDSTKDFSGKVSESSSSTTVPQLSTPNTKGKKQKGKNSQASGPSSPSPSVFNS
TDSTIETGGNTSLPPTEAAICQILSMQEMLNQLMATQKETQKQMTTMISVPVSKECKKLE
TNLGRSMEKAVKANTDALWARLQEENAKNEKLLRDRTQQVTSLMNNFMKDMPVMLEKAVK
KEMAAVGPAVVRSITPAIEKTISSAIAESFQRGAGDKAINQLEKSVNAKLEATVARQIQA
QFQTSGKQALQDSLKSSFETSVIPAFEMSSKTMFEQIDATFQKGMVEHTNAARQHLESTH
SPLALALRDAINSASTVTQTLGGELLEGQRKLLSLAAAGANPSAVNPLVSQLSNGPLGAL
HEKVEVPDPTKELSRLVSEHKYEEAFTAALQRSDVSIVSWLCSQVDLRGILSMVPLPLSQ
GVLLSLLQQLACDISNDTTRKLGWMTDVANAIIPADPMIAVHVRPIFDQVYKILNHQRSL
PTVTGAELSSIRLLMHVINSMLMTCK
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctctgctaatccaaacccccatcaccaccaacagcaacaacccatcactcct
tttgacatgcaaaccttcttcaattccatcccccaatctcaaaccccaacatctcctttc
cctcctccctactccttccctccccaatccgcaccgtttctccatcaacaacaaccccaa
caaccccaacagcaacatcaacaacaacaacacatgccttatcaccatcaccaccctcaa
tttctccaaaaccaaaacgcccctttactacactcccagcgctctctctcctacccaact
cctcctctccaacccccaatcaccatctccacttccacctcctccccttccccttcccct
tccccttctccataccccaactcgggcggcgcccgtctcatggccttgttgggcaacatc
ccttcccctccgtccaatcacgaccccccgcccccgcagccgcagccgcctcagcaccac
acccctcctccttctcctactcctaccatgatgggtatcactctgccgccgccgctgcca
ctccacactgccgggtccggccccatccggatgcccagcagtaagcttccccggggccgg
catttggtgggcgaatacgtggtgtatgatgtcgatgttaggctcccaggggagtccccg
ccgcagcagttggaagttacgcccattaccaagtatcagtcggatcctcagctcgtcgtg
gggcggcagattgcggtgaataaggcgtacatttgttatgggttgaggcaggggaatatc
cgggttcttaacattaataccgccttgcggtctttgcttcgaggacacactcagagggtc
acagacatggctttctttgctgaggatgttcaccttttggctagtgttggcgtagatgga
cgagtttatgtgtggaggatttctgaaggtccagatgaagaagataagcctcagataaca
ggaaaagcggttgttgccgttcaatttataggagaggaggcagctgtgcatccacgagtt
tgttggcactgccacaaacaagaaattttggtagttgggattggaagacgtattctgaga
attgatactacaaaagttgggaagggtgaagtgtattcggcagaggaacctctcaaatgt
cctgttgataaggtcattgatggggtccaattagttggtaatcatgatggagaagtgact
gacctatcgatgtgccaatggatgacaacccgtttagtttctgcttctgttgatggcacg
ataaagatctgggaagatcgcaagtttgcaccgctcatagtattaagaccatatgaaggc
cagcctgtttgttcggcgacatttttaactgctccccatcggcctgatcacatcatactt
atcacagcgggcccactaaatcgagaagtgaaaatttggtcctcagcaagtgatgaaggc
tggctactgccgagtgaatctgagtcatggaagtgtacacagacattggaattgaagagt
tcagctgaacctcgagttgaggaggcattcttcaatcaagttgtggcattgtctcaagca
ggcattctcttgcttgcaaatgctaagaagaatgcgatatatgctgtacacttggactat
ggtcctaatccagcagcaacgtgcatggattacatgaaagagtctacggtcactatgcca
attttgagttttaccggaacgggtgatatattatctcatggtgaacatattattcaggtt
tattgtgtccagactcaggctattcagcaatatgctttggatttagcccagtgcttgcca
ccaccactggagaacatggggttagaaaaatcggattcaaatatttcacgtgaggcaact
agtgttgaaggatttgtgactttggacccatctggaagtaaacctactgagatgctgtcg
tttgctggttcagtacccaaaccaactatacaagtaagtagctctgagactgcaactgcg
gtgaggtatactataagttctggttcagctgaggcagccacttcaaaagaaattaacagt
ttaagtactgaatctaaagctgttggggcacccgtaactagtgatgttgatagtgtttat
gtcacatcaccacctcttcctttgactcctaggttgcctagagagctctctggttatagg
agtccaacaagtagcttcgagccaccttcactcagtgtgcctgttggagaccaaccagtt
aatgattattcagttgacaggcaagtggacaccgttcatgcaaacatgtctgatgtgtct
tcgttggatgatgattctagtgtgcttaatcctcgtattatgttcaaacaaccaactcac
ctggtaactccctctgaattgaaaggaaattcatcctctggaactactagtgttcttgat
ggcaagaatgagggtgaggcaagtatacaggacgtgattgtcagcagtgatgccactaat
gctgaagtggaggtgaaagtagttggtgaaacaagatctatgcaaaatgctgaatttggt
tcccaaggagatcctcaaaatcttttgtcagaaaataaggaaaaatacttttgctcccag
gcttcagatcttggttttgagatggccagagaatgctctgccttatcagcagaaacttat
attgtagaggaagctcggcaagttggtgttaatgaaatagaagcactggcccagccttct
aatgctgatgaggatgaagtccaagactccacaaaggatttctctgggaaggtttctgag
tcatcttcatccacaacagtaccacagttgtccacacctaatacaaaagggaaaaagcag
aagggaaaaaattctcaagcatcaggtccatcttccccatctccaagtgttttcaattca
acagattctacaatcgaaacaggcgggaatacaagtctcccccctacagaagctgctatt
tgtcaaattttgtccatgcaggagatgctcaatcagctcatggcaacgcaaaaagaaacg
cagaagcagatgacaacaatgatatctgttccagttagcaaagaatgtaaaaaactcgag
acaaatctagggcggagtatggagaaagctgtcaaggccaataccgatgctttgtgggct
cgtctccaggaagagaatgccaaaaatgagaagttattacgagaccgaacacagcaagtt
acaagtttaatgaataactttatgaaagacatgccagttatgttagaaaaagcagtgaag
aaggaaatggctgcagtaggaccagctgtagttcgctcaatcactccagctattgagaaa
acaatatcttcagctattgcagagtcttttcagagaggagcgggtgataaggccatcaat
caattggagaaatctgttaatgcaaaacttgaagctactgttgctaggcaaatccaagca
cagtttcaaacttccggcaaacaggctcttcaggattctttaaaatcaagttttgaaaca
tcagttatccctgcctttgagatgtcatctaaaaccatgtttgagcaaatagatgctaca
tttcagaaaggaatggtggaacatacaaacgcagcccggcagcacttggaatctacccat
tctccactggcacttgctcttagggatgcgattaattcagcatcaacagttactcaaact
ttaggtggagaattgctcgagggtcagagaaagcttctatctcttgcagctgcaggagca
aacccaagtgcagtaaatcccttggtctcccagctgagcaatggacctttgggtgctctc
catgagaaggttgaggtgcctgatccaacaaaggagctatcaagattggtatctgagcac
aaatatgaggaggccttcactgctgccctacaaagaagtgatgtgtctattgtatcctgg
ttatgttctcaggttgatctacgtgggatcttgtcaatggttcctctccctttgagccaa
ggagtactgctttcacttttacagcagttagcctgtgatatcagtaatgatacaacccga
aaacttggttggatgacagatgttgctaatgcaataatacctgcagacccaatgattgca
gtgcatgtgcggcccatctttgatcaagtctacaaaatactgaaccatcaacgtagcttg
cctacagttaccggcgctgagctctcaagtatccgtcttctcatgcatgtcatcaactca
atgctgatgacctgtaaatga
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integrated database retrieval system
