Quercus suber (cork oak): 112012956
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Entry
112012956 CDS
T05868
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03022
Basal transcription factors
qsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112012956
09124 Replication and repair
03420 Nucleotide excision repair
112012956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112012956
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112012956
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112012956
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112012956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
112012956
NCBI-ProteinID:
XP_065633362
LinkDB
All DBs
Position
Unknown
AA seq
583 aa
AA seq
DB search
MTENKIMFKPNDPTSSSKIDVEFRLIKGYKNTKEGSNNPPLLNLSLEQGGSYIFEFENFL
DLQVCREFVGSALAKSGDAAKAKSGDTAKTKSGEAVKTTSDRSTVTYPDEQLISSAEMEL
RIKLLRENSELQNLHKKFVLGNILTESEFWATRKKLLDGDSGTKSKQRVGFKSSMILDIK
PMTDGRTNKVTFNLTPEIKYQIFALKPAVHRAFLNHVPNQMTEKDFWTKYFRAEYLHSTK
NAVAAAAEAAEDEELAIFLKEDDILANAVRQKIRRVDPTLDMEADQGDDYMHLPDHGIFR
DGSKEITDSQHEQFKRTFLQDLNRQGEVVLEGRTIDVELEDPRTVAEALAQSRQESDENA
KQERLDRISRMTEMEDLQAPHDHPFAPLCIKDPRDYFDSQQLKTSDDTRAGSEQLRCSLS
SEEAYGSLRGSISEIKAMGLSDPVVRPEVAVMVLNGLTQNISSTKFQLGKNAQEGILNSL
PNTTKEELLHHWISIQELLRHFWSSYPITTSYLYAKVSRVKDAMSKIYPQLEEIKESVPS
DLRQQVFLLVRPMHQALDAAFQHYESDLQKRSAKSGDKPNGYV
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacaagattatgttcaagccaaatgatcccacttcatcctcaaagattgat
gtagagtttagattgataaaaggttacaaaaacactaaggagggatcaaacaatccacca
ttgcttaatctctcccttgagcagggtggaagttacatttttgagtttgaaaatttctta
gatcttcaagtttgtcgagagtttgtgggaagtgctcttgcaaagtccggagatgctgca
aaagcaaagtctggagacactgcaaaaacgaagtctggagaggctgtgaaaaccacttct
gatagatctacagttacttatcctgatgaacaactcatcagttcagcggaaatggagctt
cgaataaagctattgagagagaatagtgagctgcagaaccttcataagaaatttgtgctt
ggtaatatcttgacagaatctgagttctgggctacaaggaagaagttgcttgatggagac
agtggcacaaagtccaaacaacgggttggttttaaaagttcaatgattctagacatcaaa
cccatgactgatggccggacaaacaaggttacattcaatttgacaccagagatcaaatat
cagatttttgctctaaaaccagctgttcaccgggcattccttaatcatgttcccaaccag
atgacagaaaaggatttctggacaaaatattttagagcagaatatctccatagtacgaaa
aatgctgttgcagctgcagcagaggctgctgaagatgaggagctagccatttttctgaag
gaagatgacatattggcaaatgcagttcggcagaagattcgacgggttgatccaactctt
gacatggaagctgaccaaggagatgattacatgcacctcccagatcatggaatttttcgt
gatggtagcaaggaaataactgattcacagcatgagcaattcaagagaactttcttgcaa
gatcttaaccgacaaggcgaagttgttctcgaaggaagaactattgatgtagagttggaa
gatccaagaactgtagcagaagcacttgcgcagtcaagacaggaatctgacgagaatgca
aagcaggagaggcttgatagaatttcacggatgactgagatggaggatcttcaggcacct
catgatcacccttttgctccactttgtatcaaggatcctcgtgattactttgattcccaa
caacttaaaacttctgatgatacacgagctggatcagaacaattaagatgtagcctgagc
tctgaggaagcatatggttctttgaggggttcaatatcagagataaaagctatgggatta
agtgatcctgtagtcagacctgaggttgctgttatggtccttaatggcttgacccagaac
atctcaagtaccaaatttcaacttgggaagaatgctcaagagggtatactgaacagcttg
cccaacacaactaaagaggaactactacatcattggatatccattcaagaattactgagg
cacttttggtcttcatatccaattactacatcatatctttatgctaaggtgagcagagtg
aaggatgccatgtcaaaaatttatccacagctggaggaaataaaggaatcagttccttca
gaccttcgccagcaggttttcctccttgttcgtccaatgcatcaggctctagatgctgct
tttcaacattatgagtcggatttgcagaagagatcagcaaagagcggagataaaccaaat
ggatatgtgtag
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integrated database retrieval system
