Quercus suber (cork oak): 112014693
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Entry
112014693 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112014693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112014693
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112014693
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_2
TPR_16
TPR_CcmH_CycH
Iml2-TPR_39
TPR_9
DUF1993
Motif
Other DBs
NCBI-GeneID:
112014693
NCBI-ProteinID:
XP_065637725
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MSSTTTDKPMDSDNVIVDDKYNIEAAEIIANEAQHLPITEAAPLYEQLLTLFPTAAKYWK
QYVEAHMAVNNDDATKQLFSRCLLNCLQIPLWRCYIRFIRKVNEKKGIEGQEETRKAFDF
MLSYLGADIASGPVWMEYITFLKTLPAQNTQEESQRMTAVRKVYQKXIVTPTHHIEQLWK
DYESFENSVSRQLAKGLLSEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPSGSYKEELQ
WMAWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCLMYLYHYPDIWYDYATWHAKTGSIDA
AVKVFQRALKALPDSEMLRYAYAELEESRGAIQSAKKIYESLLGDGVNTTALAHIQFIRF
LRRTEGVEAARKYFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVAHNVFEAGLKRFMHEP
VYILEYADFLTRLNDDRNIRALFERALSSLPPEESVEVWKRFTHFEQTYGDLASMLKVEQ
RRKEALSRTGEEGPSALEGSLQDVVSRYTFMDLWPCSSNDLDHLARQEWLAKNINKKIEK
SALPSGPGSVDKISTGLMSNSNVSAKVVYPDISKMVIYDPRQKSGMEILPSTTASSNLSN
PVVSIVGGGTTNAFDEILKATPPALVAFLASLPAVEGPAPDVDIVLSICLQGDIPAGYTG
KSGASPAQLSGGPAPSLSDVSGSSKAHPILSGSSFKPTRDRQSGKRKDLDRQEDDETVTV
QSQPLPRDVFRIRQIQKARAGXTSQTGSASYGSALSGDLSGSTG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaccaccacggacaaaccaatggactccgacaacgtaattgtcgatgataag
tacaacattgaagccgcagaaattattgccaatgaggctcagcatttgcctattaccgag
gcggcgccgttatacgagcaacttctaacactgtttcccaccgctgcaaaatattggaaa
caatatgttgaggcacacatggctgtgaataatgatgatgctacaaaacagctatttagc
cgttgtttattaaactgccttcaaatacctctctggcggtgctacattcgtttcattaga
aaggtgaatgagaagaaggggatagagggtcaagaagagactagaaaagcttttgatttt
atgctcagctatcttggagcagatatagcatctgggcctgtctggatggagtacatcacc
ttcttaaagacattgccggctcaaaacactcaggaagagtcccaaaggatgactgctgtt
aggaaagtataccaaaagnctatcgtcactcctactcatcacattgaacaactttggaag
gactatgagagctttgaaaattctgttagccgccaactggccaaaggactgttgtccgaa
tatcaaccaaaatataatagtgccagggctgtctacagagagcggaaaaaatatgttgat
gaaattgactggaatatgcttgctgttccaccatctggttcttacaaggaagaactgcaa
tggatggcatggaaacggctgttagcttttgagaaaggaaacccacaaaggatagacagt
gcgtcctccaacaagcgaattatattcacttatgaacagtgtctgatgtatctataccat
tatcctgatatatggtatgactatgctacatggcatgcaaaaactggttcaatagatgct
gcagtcaaagtatttcagcgagctttgaaggctcttcctgactcagaaatgctgaggtat
gcctatgcagagctggaggaatctcgtggagcaattcagtctgcaaagaaaatatatgag
agccttctaggggatggggttaacacaacagcacttgctcatatacaatttattcgcttt
ttaaggagaactgagggtgttgaagcagctcgcaagtactttttagatgctcgaaaatcc
ccaaactgcacataccatgtttatgtcgcttatgcaatgatggccttttgtcttgacaaa
gatccaaaggttgcacacaatgtttttgaagcaggattgaaacggtttatgcatgagcct
gtatacattcttgaatatgcagattttttgacacgcttgaatgatgatagaaatatccgg
gccttatttgagcgggcactaagttcactgccaccagaggaatctgttgaggtctggaaa
cgattcacccattttgagcaaacttatggagatctggctagcatgttgaaggttgaacaa
aggaggaaagaagctctttctagaacaggggaagagggaccgtcagctttagagggatca
ttgcaagatgttgtatcacgttatactttcatggatctatggccatgctcttcaaatgac
ttggatcatttggcacggcaagagtggcttgctaaaaatattaataagaaaatcgagaag
tcagctctgcctagtggacctgggtctgtagataaaatttctacgggcctgatgagcaat
tcaaatgtgtctgcaaaggtcgtttatcctgatatttctaagatggtgatttatgaccca
aggcaaaaatctgggatggaaattcttccaagcactacagcatctagcaacttatcgaac
ccagttgtttcaatagtgggaggtggaacaacaaatgcgtttgatgaaatactaaaagca
acaccgcctgcattggtagcatttttagcaagcttgcctgctgttgagggtccagctccg
gatgtggatattgtattatcaatttgtttgcagggtgatataccagcagggtatactgga
aaatcaggggcttccccggcgcagttgtcaggaggtcctgctcctagtttaagcgatgtc
tctggttcaagcaaggcccatcccatcctgagtggttcatctttcaaaccaactagagac
agacaatccgggaaaaggaaagatctggacaggcaagaggatgatgaaactgttactgtc
caaagccagccactacctagagatgttttcaggatacgacagatccagaaagctcgagca
gganccacttcacagacaggatcagcttcatatggaagtgcactttcaggagatctatct
ggtagcactggctga
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