Quercus suber (cork oak): 112015726
Help
Entry
112015726 CDS
T05868
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112015726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112015726
Enzymes [BR:
qsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112015726
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
112015726
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Med15_C
DUF2635
Motif
Other DBs
NCBI-GeneID:
112015726
NCBI-ProteinID:
XP_023903923
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MADNSEVPTECVKSVKFSFFSDEDVRKISVKKITKDQYLDGMGRPEPGGLYDPHLGPLEE
TVPCKTCGQYYSPCHGHFGHIDLVAPVYNPLLFNILYNILHRTCFFCRHFRATRKQVETC
VSQLELIAKGDIVGAKILEDDMPSETLYSDDSDGSQYDDVGHSRQQGWTSLQFTEATSVL
KKFLKPRSPACKNCEAKNPAISKPTFGWFHMRGKSGDARQNVIRGYNLEGSFTGRTNKKA
LPEVENSNDTTPWSDVVDSAETDTASDTSPRAQDSATRKHGGKGGEVPHEFVKQKDFFSG
PLLPSEVKDILKDLWENEVQLCSFISHIQHQGLEMKEMKDDYSMFFLETILVPPIKFRPP
AKGGDSVMEHPQTVLLNKVLQSNIQLRFAHDDNLERSKIVSRWMDLQQSVNVLFDSKTAT
AQGQRGIASGICQLLEKKEGMFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPYFALEL
TYPERVTPWNLVKLRKAIINGPEIHPGATHYADKLGIKKLRKEHLKERIAISRKLPSSRG
LLTQHGKGSDYEFEGKFVRRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA
NCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHVVSAVL
LTKKDTFFSADEFNQLLYCAGLSAASPVSFNRKFGQKVCILNSDYEMQPLPPAIWKPVPL
WTGKQVISALLNHITKGRPPFNVEKDAKLPHDFFKSNRNEKKLNKEEKSDKDASKEKELD
IEKTSQGKKADKDAPTRKEPDEDKLLIHKNDLVRGVIDKAQFAEYGLVHTVHELYGANTA
GVLLSALSRLFTSFLQVHGFTCGVDDLLLMKEKDNEREEKLQDCAKVGEEVHLKFVNDKG
SVKIDADVLQLNIEKKIRSNGESALTDLDRKMISKLNEEVSKDFFKELLSRGLLKPSGKN
CISLMTTSGAKGASVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCAARAGGFII
DRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKICYDHTVRDADG
SIIQFFYGEDGIDVHQTSFIAKFEALAANQEIFSKKFRQGLHKSNVYIKGLPSSLEKKAK
DFVHKFTLKEKNPDILKEKDFLKLMEHKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTF
HLAGRGEMNVTLGIPRLQEILMTAARDIKTPVMTCPFQVGRSKEDASCLADKLKKITVAD
IIKSMKVSVVPFSVHDHQICSIYKLEMMLYIPENYPKNTDISLEDWEETLEVVFVRELED
AIQNHLLLLSKISGIKNFVPDSKSNASNGTDDDDVSGNRSQHEEVADADEDADDGAVSDD
LGLDVQKRKQQLIDEMDYDDASEEEPNEGEPSAGSESEIDQAENEIEVTKDDAIEPLDAK
DISYEQSGKSSKHKSKDKKNESKAKRKKRSRGKLVKKEYDRAYFVKAKGMHFEIHFRFTN
EPHILLAQIAQKTAKKVYIQSFGKIDGCKVVTCQEKQVIFYGKNPKARKDILLAEKEKVP
ALQATGVDFGTFWQFQDVLDVRCVYSNSIDAMLNTYGVEAARATIIREIQHVFGSYGISV
NMRHLTLIADYMTHSGGYRPMNRLGGIANSISPFCKMSFETASKFIVEAASHGETDELES
PSARVILGLPVKVGTGSFDVMQKLEI
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaactcagaggtaccgacggagtgcgtgaaatcggtgaagttcagtttcttc
agcgacgaagatgttcgaaaaatcagcgttaagaagattacaaaagatcagtatcttgat
ggcatgggcagacctgagcctggtggattgtatgatcctcatttgggccccctcgaagaa
accgtcccttgcaagacatgtgggcagtactatagtccttgccatggtcattttggtcat
attgacctcgttgctccggtttataatcctttgctattcaatattctgtacaatattctt
catagaacttgtttcttttgccgccattttcgggcaactagaaaacaggttgagacatgt
gtttctcaattggaactcattgcgaaaggtgatattgttggggccaaaatattagaagat
gacatgccaagtgaaaccttgtattcagatgacagtgatgggagtcaatatgatgatgtt
gggcattcaaggcagcaaggatggacctctcttcagtttactgaagcaacgtctgttttg
aaaaagtttttgaagccgaggtctccggcttgtaagaactgtgaagccaaaaatcctgca
atcagtaaacctacttttggatggtttcatatgagaggaaaatcaggtgatgccagacag
aatgttattcgagggtataatttggaagggtcgttcactggtagaactaataaaaaagct
ttgcctgaggtggaaaatagcaatgatacgactccctggagtgatgttgttgattctgct
gaaacagatactgccagtgacacctctcctagagcacaagatagtgctacaagaaagcat
ggaggaaaaggaggggaagtgcctcatgagtttgttaagcagaaagattttttctcggga
cctctattaccatcagaggttaaggatattttgaaggatctctgggaaaatgaggttcaa
ctctgctcatttatcagtcatattcagcatcagggacttgaaatgaaagaaatgaaagat
gattactccatgttcttcttggagactattcttgtacctccaatcaaattccgcccccca
gccaagggaggtgattcagtaatggagcatccacaaactgtcttgttaaataaggtgcta
cagtcaaatatacaattaagatttgctcatgatgacaacttagagcgctcaaagatagtg
agccggtggatggatctccaacaatcagtaaatgtgttgtttgatagcaaaactgcaaca
gctcaaggtcaaagaggtatagcttcaggaatttgtcagttgctggaaaagaaggaaggc
atgttccgccagaaaatgatgggaaagagggtcaattattcttgccgctctgtcatatcc
ccggatccctatttagcagttaatgaaattggaatccctccatattttgcattagaatta
acctatcccgagagggtgactccttggaatcttgtcaagctgaggaaagctatcatcaat
ggtcctgaaatccatcctggagctacacactatgctgataagctgggtattaagaaactg
cgaaaagaacacctaaaagaacgcattgcaatatcaaggaaattaccatcctcacgaggt
cttctcacacagcatggaaaaggcagtgattatgaatttgaaggaaaatttgtacgtcgt
cacttgcaagatggggatattgtgcttgttaacagacagccaactctccacaagcctagt
ataatggcacatgtagttcgagtgttaaagggggagaaaacacttcgtatgcactacgca
aactgcagtacgtataatgctgattttgatggtgatgaaatgaatgttcatttcccacaa
gatgaaatttctcgtgctgaagcgtacaacattgtaaatgcaaataatcaatatgtcaag
ccaacaagtggtgaacccatcagagccttgattcaggatcatgtagtaagtgctgtactt
cttacaaagaaggataccttttttagtgctgatgagttcaaccaacttctttattgtgcc
ggcctctcagctgcaagtccagtttcttttaacaggaaatttggccagaaagtttgcata
ttaaactctgactatgagatgcagccccttccgcctgcaatatggaaaccggtgcctctt
tggacagggaaacaggtaatcagtgccttgctgaatcatattacaaagggtcgcccacca
tttaatgttgaaaaagatgcgaaacttccacatgatttttttaagagtaatagaaatgaa
aagaaattgaacaaagaagaaaagtctgataaagatgcatcaaaggaaaaggagctagat
atagagaaaacaagtcaagggaaaaaggcagacaaagatgcaccaacgaggaaggagcct
gatgaagataagttgttgatacataagaatgatttggtgcgtggcgtgattgacaaggct
cagtttgctgaatatggtttggttcatacagtgcacgaactctatggcgcaaatactgca
ggtgtcctgctttctgcgttaagtcgcttatttacttcttttttgcaggtgcatgggttc
acatgtggagtagatgatcttttgttaatgaaagagaaagacaatgagagggaagaaaaa
cttcaagattgtgcgaaagttggggaagaagttcatcttaagtttgttaatgacaagggt
agtgttaaaatagatgcagatgttctgcaactgaatattgaaaaaaaaatacgcagtaac
ggagaatctgccttaacagacttggatcgaaagatgataagtaaattgaatgaagaagta
agcaaggactttttcaaagagctgttgtccagagggttgttgaaaccctctggaaagaac
tgtatttctctcatgactacatcaggggctaagggtgcttcggttaatttccaacaaata
tcttctcatttaggccaacaagagttagaaggaaaacgagtccctcgaatggtttctgga
aagactttaccctgctttcctccatgggattgtgcagctcgagctggaggctttattatt
gatcggtttcttactggattgcatcctcaagaatattatttccattgcatggctggtcgt
gaagggttagttgatacagcagtgaagacatctcgtagtggatacctccaaagatgccta
ataaaaaatcttgagtgcctaaaaatatgttatgatcatactgtccgtgatgctgatggt
tccattattcaatttttctatggagaagatggtatagatgtccatcaaacaagtttcatt
gctaaatttgaagcgctagcagctaatcaagaaattttttccaaaaaatttcgtcaaggg
cttcacaagtccaatgtttatattaagggattgccttcttctcttgaaaaaaaagcgaag
gactttgtgcataagtttaccttgaaggagaaaaatcctgatattttaaaagaaaaggat
tttttgaagttaatggaacacaaatacatctcaagtcttgcacagcctggagaaccggtt
ggtgtgcttgcagctcagtctgtaggagagccatcaactcagatgacgctgaatacgttc
catcttgctgggagaggtgaaatgaatgtgacacttggaattccacgtttgcaggaaatt
ttgatgactgctgcaagagatattaagacacctgtgatgacatgccctttccaagttggg
aggtcaaaggaagatgcctcttgtcttgctgataaattgaagaagataactgtagcagat
ataataaagagtatgaaagtatcagttgtgccattttctgttcatgatcaccagatttgc
agtatttacaagcttgagatgatgctttacatacctgaaaactatccaaaaaacactgat
atttcattagaagactgggaggaaactctagaggttgtttttgtgagggaattggaggat
gccatacaaaatcatctgctcttgctttctaaaattagcggcatcaaaaatttcgtgcca
gattcaaaatcaaatgcatcaaatgggacagatgacgatgatgtatccggcaacagatca
cagcatgaggaagttgctgatgctgatgaagatgctgatgatggtgcagtgtctgatgat
ctgggtttggatgtacaaaagagaaaacagcaattaatagatgagatggattatgatgat
gcttctgaagaggaaccaaatgaaggggagccatcagctggctctgaaagtgaaattgat
caggctgagaatgaaattgaagttactaaggatgatgcgattgagccacttgatgccaaa
gatatatcatatgaacaatcagggaaatcctctaagcataaatcaaaggacaaaaagaat
gaatcaaaagccaaaagaaagaagagatccaggggaaaactagtgaaaaaggagtatgat
agagcatattttgtgaaagctaagggaatgcactttgagatccattttcgatttactaat
gaacctcatattttactggctcagattgctcaaaaaacagccaagaaggtttacatccag
agctttggcaaaattgacgggtgtaaagttgttacatgccaagaaaagcaagtgatattc
tatggtaaaaatcccaaagccagaaaggatattttgcttgcagaaaaggaaaaagttcca
gcactgcaagccactggagtggatttcggtacattttggcagtttcaggatgttcttgat
gtcaggtgtgtatattccaacagcattgatgctatgctaaacacatatggtgtggaagcc
gccagagcaactatcatcagggaaatacaacatgttttcggttcttatgggatatctgtc
aatatgcggcacctaacacttattgctgactatatgactcattcgggagggtatcgtcca
atgaacagacttgggggaatagctaactcgatatctcctttttgtaaaatgtcttttgag
acagcttctaaatttattgttgaagctgcaagtcatggggagacagatgagttggagtct
ccatctgctagggttattcttgggttgccggtaaaggtaggtactggaagttttgatgtt
atgcagaagttggaaatctga
DBGET
integrated database retrieval system
