Quercus suber (cork oak): 112016275
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Entry
112016275 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112016275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112016275
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112016275
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112016275
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112016275
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
zf-C2H2_2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
112016275
NCBI-ProteinID:
XP_065617228
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MSSLICLLQVPVEQKLPSLYLLDSIVKNIGRDYVRHFSPRLPEVFCEAYRQVHPNQYNSM
RHLFGTWSAVFPPSVLNKIEAQLQFSPSVNNQSSVLATMRASESPRPTHGIHVNPKYLRQ
LEHSTLDTNIQHPRGTSALKMYGQKPAIPYDEFDPGHAEVVSSQVGAQRWSSTGDAGHTP
FAFGANKVHPPSTARLARPSSPSRTGPDRSLSLAGDEFAAENSPRRFVDRASPSHPFEYG
LGRAIGRDDETSGWQRKHYSDNNQKTTAVYHLGNGHEHQRPRALIDAYGNDTGKRSYNNK
PLQVQRLDINDIDSKVAPASWQNTEEEEFNWEDMSPNLGDRGTSNDFLSSAVPPFGSFRT
RPGFGAQSAAPLEPDNRSSWLSQAQLPAVDDSSINAEDPVSLSSFGRGSTRKISGFRTER
NQIRDSRYPQEAWNMPPHLAKGRERNFHMPLLASGTSPSDCEKMSPLIDKLPDADPQICG
PPTITSRIGPSLDSFGVEPRPGVVPSYMGVRPPLNVHNSHPQHLLPNFMQQKHMRSQFQS
INASNTVNNLGPNRSFYIPEQQMDGFGNKELSSTKLQQLPSQHAGLIPLSQAQVTSLQPQ
FLPSQEVHQSAAAVLPPHFLAAPLNHGYNSRGHGATVSTGPSNPIPVVQLNILNRPLHLQ
GGSLPPLPPGPPPMPSQMMPLTQNAVPGVSSQQPSSAFPGLFDSLMAQGLISLNKQAQDS
VGVDFNADLLKVRHESAINALYADLPRQCTTCGLRFKSQEEHRSHMDWHVTKNRMSKNRK
QKPSRKWFVSVSMWLSGAEALGAEAVPGFLPTETVVEKKDDEEMAVPADEDQNACALCGE
PFEEFYSDEAEEWMYXGAIYSNAPSGLTVGMDRSQLGPIVHAKCRSESSVVSSEDFRQED
GGITAEGSQRKRMRI
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcccttatatgtcttctgcaggtcccagtcgagcaaaaacttccttcactatat
cttttagacagtattgtcaagaatattggccgtgattacgtaaggcatttctctccccgt
ctgcctgaggttttctgtgaggcatacaggcaagttcacccaaatcagtataattctatg
cgacatctctttggcacctggtcagcagtatttccaccttctgtccttaataagattgag
gcacaactgcaattttctccttcagtaaataatcaatcatctgttttggctaccatgagg
gcttctgaatctccacgaccaacacatggcattcatgttaacccaaagtacctgcgtcag
ttggaacattcaactctggatactaatattcagcatcctagaggaacttccgctttaaaa
atgtatggtcaaaaacctgccattccatatgatgagtttgatcctggtcatgcagaggtt
gtatcctcacaggttggagcccaaagatggagctcaactggagatgcaggtcatacacct
tttgcctttggggctaataaggtgcatccaccttcaactgccagacttgcaagaccctct
tcgccttcaagaactgggcctgataggtctttatcattagcaggtgatgaatttgctgca
gaaaattctcctagaaggtttgttgatagggcctctccatctcatccatttgagtatgga
cttggtagagcaattggtagagatgatgaaacaagtggctggcagagaaaacactattct
gataataatcagaaaactactgcagtttaccaccttggtaatggacatgagcaccaaaga
ccaagagctttaattgatgcatatggaaatgacacagggaagagatcttataacaataag
cctctgcaggttcaacgcctggacataaatgatatagacagtaaggtcgctccagcatca
tggcagaatactgaagaggaagagtttaattgggaagatatgagccccaatttaggagac
cgcggtacaagtaatgatttcttgtcatcagctgttccaccttttgggagctttagaaca
aggccgggctttggagcgcagagtgctgcccctttggagcctgataataggagcagttgg
ttgagtcaggctcagcttcctgcagttgatgattcttctataaatgctgaagatccagtc
tccttatcaagttttggtcgtggatcaacgcggaagatatctggattccgaactgagaga
aatcagattcgggattctcgctatcctcaggaggcctggaatatgcctccccatctcgcc
aaaggaagagagaggaatttccatatgcccttattggcaagcggtacatctccatcagat
tgtgaaaaaatgtctcctcttatagataagcttccagatgctgacccacaaatttgcgga
ccccccacaattacatcaagaattggtcctagtcttgactcttttggtgtggagccacgg
cctggtgttgtaccctcatatatgggggtaagacctcccctaaatgtgcataactctcac
ccacagcatctgctgcctaattttatgcagcagaaacatatgaggagccaattccagtca
ataaatgctagcaatactgtcaataatctaggtccaaataggtctttttatatccctgag
cagcagatggatggttttggaaacaaggagctgagttctacaaagctgcaacaattgcct
agtcagcatgcaggactaattcctctaagccaggcacaagtcacttctttacagccacaa
tttcttccatctcaggaggtgcatcaatctgcagcagctgtgttgccacctcattttctg
gcagcccctttgaatcatggatataactcacgagggcatggtgccactgttagtacaggt
ccatcaaatcctatacctgttgtacagttgaatatcctaaacaggcctttacatttacag
gggggctcattgccacctctacctcctggcccccctcccatgccatcacaaatgatgcct
ctcacacaaaatgctgttcctggtgtctctagtcaacagccgagcagtgcatttcctgga
ttgtttgattctctcatggctcagggtttgatctcattgaacaaacaagctcaggattct
gtaggagttgattttaatgcggaccttctcaaggtgcgtcatgagtctgcaataaatgcc
ctatatgctgatctccccagacaatgcacaacctgtggccttagattcaaaagccaagaa
gagcaccgtagtcatatggattggcatgtaactaagaatcgtatgtctaaaaaccgaaag
cagaagccttctcgtaagtggtttgtaagtgtgagtatgtggctcagtggtgcagaagca
ttaggagctgaagcagttcctgggtttttacctaccgagaccgttgtagaaaagaaggat
gatgaagaaatggctgtacctgctgatgaagatcagaatgcatgtgcattatgtggagag
ccttttgaagagttttacagtgatgaggcagaagaatggatgtatnaaggggctatttac
tcaaatgcacccagtggcttgacagtaggcatggataggtctcagttaggcccaatagtg
catgctaagtgccggtctgaatctagtgtggtttcctctgaagattttagacaagaagac
gggggaattactgcagagggtagtcaaagaaaacgtatgcggatttaa
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