Quercus suber (cork oak): 112017549
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Entry
112017549 CDS
T05868
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03013
Nucleocytoplasmic transport
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112017549
03015 mRNA surveillance pathway
112017549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112017549
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112017549
mRNA cycle factors
P-body specific factors
112017549
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
112017549
NCBI-ProteinID:
XP_065624221
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MDHHEDECRVGAENHGKQDEEEAAARLEEMKKSVESKMALRQSNMNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEDLRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLTQGLLKVFFPGKSGDDLDADKNLKAMKKRSTLKLLLELYFVGVIED
SGIFMNIIKDLTNLEHLKDRDTTQTNMTLLASFARQGRIFLGLSFSGQEIYEEFFKGLNI
TTDQKKFFRKAFHTYYDAAAELLQSEHASLRQMEHENAKILNARGELSDENVSSYEKLRK
SYDHLYRNISSLAEAFDMQPPVMPEDGHTTRVTTGEDASAPASGKDSVLEALWDDEDTRA
FYEGLPDLRAFVPAVLLGEAEPKVNEQSAKMQEQQTELAPESDQRQQATQDTTEVSADSG
TLQEGKNLDRGKDKEEKDKEKTKDMDKEKGKDKDADKKGENEKEKLKGLEGTNLDALLQR
LPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIATSGLVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLHQYIRKLLFSDLDKNTIEHVLRQLRKLPWSECEPYLLKCFMKVH
KGKYGQIHLIASLTAGLSRYHDEFAIAVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGE
LYNYEHVDSSVIFETLYLILVFGHGTPEQDALDPPEDSFRIRMVCTLLVTCGHYFDRGSS
KRKLDRFLVHFQRYILSKGALPLDIEFDLQDLFAELRPNMTRYSTIEEVNAAIIELEDHE
HTVSTDKVGNEKHSDTEKRSRRSTSDATSANGQSINGTDENGVHEGIGDTDSESGSGSEP
EGHDDEELDEENHDDGCDSEDEDDDDGGGPASDDDDEVRVRQKAPEVDPLEEANFEQELK
AVMQESMEQRRLELRGRPTLNMMIPMNVFEGPTKDHHGRGGESGDETLDEEAGGSKEVPV
KVLVKRGNKQQTKQMLIPRDCSLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNGLG
TQTINWSQGGGSRVASRGNTWEGTGSRASGSRHRHHNYSGGGVYYSRKR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaggatgaatgccgtgttggagctgaaaatcatggcaagcaagatgag
gaggaagctgctgctcgtcttgaggaaatgaagaaatcagttgagtcaaaaatggctctt
cgtcaaagcaatatgaatcctgaaaggcctgattcaggatttcttaggacattggactcc
agcattaaacgcaatacagcagttataaaaaaactaaagcagataaatgaagagcagcgc
gaaggcctgatggaagatttgcgaggtgtcaacctaagcaaatttgttagtgaagccgtc
acagctatttgtgatgccaagcttagaagttcagatatacaagcagcagttcagatctgc
tctttgcttcatcaaaggtataaagatttctcaccaagcctgactcaagggctcttgaag
gtcttttttcctggaaagtctggggatgacttggatgcagataagaacttgaaggccatg
aaaaaacgcagcactctgaaactccttttggaactttactttgttggagttatagaagac
agtggcattttcatgaatatcattaaggatctgacaaacttagaacatttaaaggacaga
gatactactcagacaaatatgacccttcttgctagttttgctcgacaaggaagaattttc
ctaggactttctttctctggacaagaaatttatgaagagttttttaagggccttaatatc
acaacagatcaaaagaagtttttcaggaaggcattccatacatactatgatgctgcagct
gagctacttcagtctgagcatgcttcacttcgtcaaatggagcatgaaaatgctaagatt
ctaaatgctagaggagagctcagtgatgaaaatgtctcttcatatgaaaagctgcggaaa
tcttatgaccatttgtaccgcaatatctcttctttagcagaagcatttgatatgcagccc
ccagtgatgccagaggatggtcacacgactagggttactactggggaggatgcttcagct
cctgcttctgggaaagattctgttctagaagctttgtgggatgatgaagataccagggct
ttctatgaaggcttacctgatctcagagcatttgtaccagcagtattattgggagaagca
gaacccaaagtgaatgaacaatctgcaaagatgcaagaacaacagactgaactggcacct
gaatcagaccaacgtcagcaggctacccaagatacaacagaggtttctgcagactctggc
actttgcaggaggggaaaaacttagatagagggaaagataaggaagaaaaagataaagaa
aagactaaagatatggacaaagagaaagggaaagataaagatgcagataaaaagggggaa
aatgaaaaggagaagctaaaaggtcttgaaggcacaaatttggatgctttattacagagg
cttccgggttgtgtgagccgtgatcttattgatcaactgactgtagaattctgttattta
aattcaaagtccaatcggaaaaagcttgtaagggcactgtttaatgtccccaggacatct
ctagaactactaccatactactcacgcatggttgccacactttcaacttgtatgaaggat
gtctcttccatgctgttgcagatgttggaggaagagtttaacttcttaattaataaaaag
gatcaaatgaacattgaaacaaagataaggaatattaggtttattggagaactctgcaag
tttaaaattgcaacatctggccttgtttttagttgtttgaaggcttgtttagatgatttc
actcatcacaacattgatgttgcttgcaatcttctcgagacatgtggtcgttttctgtat
cgatctcctgaaactaccattcggatggctaacatgttggaaattttgatgcgcttgaaa
aatgtcaaaaatctggatcctcgccacagcacccttgtagaaaatgcttactacctgtgc
aaaccacctgaaagatctgcacgagtctctaaagtccgtcctccattgcatcagtatatt
aggaaattgctattttcagatcttgataagaacaccattgagcatgtcctgaggcaactt
cgcaaattgccatggagtgaatgtgagccatatcttttaaaatgctttatgaaggttcac
aaagggaagtatggtcagattcacttaattgcttctctcactgctggtttgagtcgctat
catgatgagtttgccattgctgttgttgatgaggttttggaggagattaggcttgggcta
gaattaaatgattatgggatgcaacaaagacgcattgcccatatgcggttcttaggggag
ctgtataattatgagcatgtagactcatctgttatttttgagacactttatttgattctt
gtctttggccatggcactccagagcaagatgcactagacccaccagaagatagtttccgc
atcaggatggtttgtactcttcttgtcacctgtgggcactactttgatcgaggctcttcc
aagaggaagcttgatagattcttagtacattttcagaggtatattctcagcaaaggtgca
ctacctctagatattgaatttgacttacaggacttatttgctgaattacggcccaatatg
actcgatactctaccattgaagaggtgaatgcagctataattgaacttgaggatcatgaa
catactgtttcaactgacaaggttggtaatgagaagcactctgacacagaaaagcgttca
aggaggagtacttctgatgccacctcagcaaatggacagagcattaatggcactgacgaa
aacggggtgcatgaaggcattggggacactgatagtgagtcggggagtggcagcgagcca
gagggacatgatgatgaagagttggatgaagagaatcatgatgatggatgtgatagtgag
gatgaggatgatgatgatgggggtggacctgcttctgatgatgacgatgaagtccgtgtc
aggcagaaggcccctgaggtggaccctctggaagaagctaattttgaacaggagcttaag
gccgtaatgcaggagagcatggaacagcgccgtctagagctgcggggtcgacctacatta
aatatgatgataccaatgaatgtgtttgaggggcccacaaaggatcatcatggaagggga
ggggagagtggagacgagacattagatgaggaagctggaggaagcaaggaggttccggta
aaagttcttgtgaagcgtgggaacaagcaacaaacaaagcagatgttgatccctcgggat
tgctcacttgtgcagagcacaaaacagaaagaagcagctgagcttgaagagaaacaagac
attaagaggttggtattggagtataatgatcgagaagaggaggagcttaatggattgggt
acccaaacaattaactggtcacaaggtgggggcagcagagttgccagtcgtggcaacact
tgggaaggaactggtagtagggctagtggatcacgtcatcggcatcataattactcaggt
ggtggagtctattacagcagaaaaaggtga
DBGET
integrated database retrieval system
