Quercus suber (cork oak): 112017680
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Entry
112017680 CDS
T05868
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03030
DNA replication
qsu03420
Nucleotide excision repair
qsu03430
Mismatch repair
qsu03440
Homologous recombination
qsu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112017680
03420 Nucleotide excision repair
112017680
03430 Mismatch repair
112017680
03440 Homologous recombination
112017680
03460 Fanconi anemia pathway
112017680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
qsu03000
]
112017680
03032 DNA replication proteins [BR:
qsu03032
]
112017680
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112017680
Transcription factors [BR:
qsu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112017680
DNA replication proteins [BR:
qsu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112017680
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112017680
MMR (mismatch excision repair)
112017680
DSBR (double strand breaks repair)
HR (homologous recombination)
112017680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
112017680
NCBI-ProteinID:
XP_023905901
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MTKCVSPDAISTILANPSPESSSDVPEIVVQVMDLKATGASGNRFMFTANDGKMKLRGIL
PTNMGSEVMSGNIQNLGLIRILDYTLNDIPNKPEKYLIVTKCEVVSPPLEMEVKSEVKSE
ETGIVLRPKQENEIKSEVKSEVPGIFLKPKQEIVSKSAAQIVHEQHQNMAPAARMSMTRR
VFPLVSLNPYQGSWTIKVRVTSKGSMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAA
KKFYDRFQLGKVYFISRGTLRLANKQFKTVKNDYEMTLNENSEVEEASNEETFVPETTFN
FVPIDSLGPYVNGTELVDVIGVVQNVSSTMSIRRKSNNDTIPKRDITIADETKKTVVVSL
WNDLATSVGQELLDIADKSPIVAIKSLKVGDFQGVSLSALSRSVALVNPDLPEAKKLRSW
YDSEGKESSMASVSSGMSPSSKSGSRSMYSDRVSLSHIQKNPSLGDEKPVFFSIRGYISF
IKPDQAMWYRACKACNKKVTEALGSGYWCEACQKNDEECNLRYIMVVKISDASGEAFLSV
FNEEAEKIVGCSADELDKLKSEEGEENPYQLKLKQATWNSHLFRVSVAQNEYNNEKKQRI
TVRAVAPVDFAAESRFLLEEISKMRVSK
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagtgtgtgagtccagatgcgatctcgactattctggcgaacccctcgccggaa
tcttcctccgatgtccctgagatcgtcgttcaggtcatggatctcaaggccaccggtgct
tccggtaaccgttttatgtttacagctaatgatggaaagatgaagctaaggggaattctc
ccaacaaacatgggttccgaggtcatgtctggaaatattcagaacctgggtctgattcgc
attcttgattatactctcaacgacattccgaataagcctgagaagtatctgattgtcaca
aaatgtgaggtggtttctccgccacttgaaatggaggtcaaatccgaggtcaagagtgag
gaaactggtattgtattgaggccaaagcaagaaaatgagattaagagcgaggtaaaaagt
gaagtgcctgggatttttttgaagccaaagcaggaaattgtttctaaatcagctgctcag
atagtacatgaacagcaccaaaatatggccccagctgcacggatgtcaatgacgcgaaga
gttttccctctggtgtccttgaacccctaccaaggtagttggaccataaaggttcgtgtc
acaagcaaaggaagtatgcgtacctataagaacgcgagaggagaaggctgtgttttcaat
gtagagttaacagatgaagatggcacacaaatacaagcaacaatgttcaatgaagctgca
aagaaattctatgacaggtttcaattggggaaggtatatttcatttcaagggggactcta
agacttgctaataagcagtttaagacagtgaaaaatgattatgaaatgaccttgaatgag
aattctgaagtagaagaggctagcaatgaagaaacttttgttcctgaaacaacattcaat
tttgtcccaattgatagtttaggtccttatgtcaatgggacggagcttgtggatgtcatt
ggtgttgttcaaaatgtctcctctacaatgagcattcggaggaagagcaacaatgatact
atcccaaagcgtgatattactattgctgatgagacgaaaaagacagttgtggtctccttg
tggaatgaccttgcaacaagtgtggggcaggaattgctggatattgcagataaatcacct
atagttgcaattaaatccctcaaagttggggattttcaaggtgtatctttgtcagcactg
agcagaagtgttgcgcttgtaaatcctgatttacctgaagcaaagaagttgagatcctgg
tatgattctgagggtaaagaaagttcaatggcatctgtcagttctggtatgagtccatca
tcaaagagtggttcaaggtcaatgtactctgatcgggtctctctttctcacatacagaag
aacccatccttgggtgatgaaaagcctgtatttttcagcattagaggatacataagcttc
atcaagcctgatcaggcaatgtggtaccgggcttgcaaagcttgcaacaagaaagtgaca
gaggctttggggtctgggtattggtgtgaagcatgccagaaaaatgatgaggagtgcaat
ttaagatacataatggtagtcaaaatttctgatgcaagtggtgaagcttttttatctgtc
tttaatgaggaagcggagaaaattgttgggtgctctgctgatgagcttgataagttgaaa
tcagaggagggggaggagaatccataccaactaaaattgaagcaagccacctggaattct
catcttttccgggttagtgttgctcagaatgagtacaataatgagaagaagcaaaggatc
acagtcagggctgttgctcctgttgattttgctgctgaatcaagatttttgcttgaagag
atctcaaagatgagagtttctaaatag
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