KEGG   Quercus suber (cork oak): 112017711
Entry
112017711         CDS       T05868                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112017711
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qsu03019]
    112017711
   03036 Chromosome and associated proteins [BR:qsu03036]
    112017711
Messenger RNA biogenesis [BR:qsu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     112017711
Chromosome and associated proteins [BR:qsu03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     112017711
    COMPASS/SET1 complex (yeast)
     112017711
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WD40 Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 NBCH_WD40 Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_NUP159_NUP214 eIF2A Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_DCAF4 KNTC1_N Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 VPS11_N Cytochrom_D1
Other DBs
NCBI-GeneID: 112017711
NCBI-ProteinID: XP_023905932
LinkDB
Position
Unknown
AA seq 332 aa
MGGSQSEREDKVSLELNEEIIQSMEVGMAFRDYNGRISSMDFHKTSSYLVTASDDESIRL
YDVASASCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRAQGRPAMAYDEQGLVFAIAF
GGYIRMFDARKYEKGPFDIFSVGGDTSDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTL
LSTYNVKPVSSNSTLEASFSPEGMFVISGSGDGSVYSWSVRSGKEVASWMSTETEPPVIK
WAPGSLMFVTGSSELSFWIPDLSKLGSYAGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atgggtggctctcaatccgaaagagaagacaaggtttcattggagctgaatgaagagatt
attcaaagcatggaagtcggcatggctttcagagactataatggtagaattagttcgatg
gattttcataagacttcaagttatctagtaacagctagtgatgatgaatccattcgcctt
tatgatgtcgccagtgcaagctgtttgaagacaattaacagcaaaaagtatggggttgat
ctggtttgctttacttctcaccctacaacagtcatctactcttcaaaaaatggctgggat
gaatccctgaggttactatcattgcacgacaacaagtatttgcggtattttaaaggtcac
catgacagggttgtgtcactcagcttgtgctctcgcaaagaatgctttatctctggttct
cttgatcgaactgttttgctctgggatcaacgagctgagaagtgtcagggtcttttacgt
gcacaaggaaggcctgctatggcatatgatgaacaaggactagtctttgcaattgccttt
ggaggatacattagaatgtttgatgctcgcaaatatgaaaagggtccttttgacatcttt
tctgttgggggagatacatctgatgcaaatgttgtaaagttcagtaatgatgggaggctt
atgcttttgacaactatggatggacatattcatgtgcttgattcattccgtggcacactt
ttatccacatataatgtcaagcctgtttcaagcaattccacattagaggcatcattcagc
cccgagggaatgtttgttatatcaggttcaggtgatggaagtgtttattcttggagtgta
cgaagtgggaaagaagttgctagttggatgagtactgaaactgagcctcctgtcataaaa
tgggctcctggaagtctgatgttcgtcactggctcttctgaactgtcattctggataccg
gacttgtctaagttgggatcttatgctggaaggaagtag

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