Quercus suber (cork oak): 112018247
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Entry
112018247 CDS
T05868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03013
Nucleocytoplasmic transport
qsu03015
mRNA surveillance pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112018247
09122 Translation
03013 Nucleocytoplasmic transport
112018247
03015 mRNA surveillance pathway
112018247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112018247
03041 Spliceosome [BR:
qsu03041
]
112018247
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112018247
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112018247
Spliceosome [BR:
qsu03041
]
Complex C
Other components
EJC/TREX
112018247
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112018247
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Metallophos_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
112018247
NCBI-ProteinID:
XP_065625211
LinkDB
All DBs
Position
Unknown
AA seq
498 aa
AA seq
DB search
MCFFLLCRGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA
KSGMGKTAVFVLSTLQQIEPVAGQVSAIVLCHTRELAYQICHEFERFSTYLPDLKVAVFY
GGVNIKVHKDLLKNECPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLESLDMRR
DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQEPMEIYVDDEAKLTLHGLVQHYIKL
SESEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLKECNFPSICIHSGMSQEERLTR
YKGFKEGQSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT
FVSSASDSEVLNNVQMRFEVDIKELPEQIDTSTYSKSNQCVKSGRSHYSGPVDGTIHVVV
GGGGSHLSTFSGVTPRWSLYRDYDYGFVKLTAFNHSSLLFEYKKSSDGKVYDSFTIAREY
KDVLACVHDSCAPTTLAS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcttccttctttgcaggggctatgttggaattcacagttcaggattcagagac
tttcttttgaagccagagcttcttcgagctattgtggactcgggatttgagcatccttct
gaagtgcaacatgaatgtatccctcaagctattctgggtatggatgtcatttgtcaagct
aagtctggaatgggaaaaactgctgtttttgttctttcaacattgcagcagattgaacct
gttgccggccaagtttctgcaattgttctgtgtcatacaagggagttagcataccagatt
tgtcatgagtttgagagattcagcacatacttgcctgatctaaaggttgccgtcttctac
ggtggtgtcaacatcaaagttcacaaggatttgctgaaaaatgaatgccctcatattgtt
gttggaacgcctggaagaatattggcactagcaagagagaaggacctttctttgaagaac
gtgaggcattttatactggatgaatgtgacaagatgcttgaatcacttgacatgaggaga
gatgtgcaggagatcttcaagatgactcctcatgataaacaagtaatgatgttttctgca
acactcagcaaagaaatccgcccggtttgcaagagatttatgcaagaaccaatggaaatt
tatgttgacgacgaggccaagttgaccctgcatggtcttgttcagcactacatcaaattg
agcgagtcagagaaaaaccgcaagttgaacgacctccttgatgcactggacttcaatcaa
gttgttatctttgtcaaaagtgttaatagagctgctgaactgaacaagctactgaaggag
tgcaattttccctccatatgcatccattctgggatgtcccaggaggaaaggttgacgcgc
tacaaaggttttaaggaagggcagtcaaggattcttgtagccaccgatttggttggtagg
gggatagacattgaacgtgttaacattgtcatcaattatgacatgccagattcagcagac
acttatctgcacagggttggtagagctggtaggttcggcaccaaagggcttgcaattacg
tttgtttcatctgcttctgattcggaggttctcaataatgttcagatgaggtttgaggtg
gatataaaagaacttcctgaacagattgatacctctacatacagtaagtctaatcaatgc
gtgaagtcaggaaggtctcattactcgggtcctgtggatggaacaatccatgttgttgtt
ggaggtgggggtagccacttatcaacgttcagtggagtgacacctagatggagcctttac
agagattatgattatgggtttgtcaaactgacagcattcaatcactcctctctcctcttt
gagtataagaaaagcagtgatggaaaggtatatgattccttcacaatagcaagggagtac
aaagatgtcctagcttgtgtgcatgatagttgtgcaccaaccactttagcatcttaa
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