Quercus suber (cork oak): 112019278
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Entry
112019278 CDS
T05868
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112019278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
qsu03036
]
112019278
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112019278
Chromosome and associated proteins [BR:
qsu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
112019278
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
112019278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DUF1666
Motif
Other DBs
NCBI-GeneID:
112019278
NCBI-ProteinID:
XP_023907585
LinkDB
All DBs
Position
Unknown
AA seq
1239 aa
AA seq
DB search
MEEDEDRILLNSLGIASANPEDIERDVLAEATRNNENNGEGGGGPEEETLEKPEGIDPSS
TSKAKLYHKLRAVEFEIDAVASTVEQARNVASDEDRAGDGNDSGGLGNKEDSGQVSPNGL
DLQHALAADRLRSLEKTRAQLENELSDLRKESSSKGVEHNKVLRDMVKEEPRRKRKLKDV
QKSGKIIEKKKKIVSFEEDTGFDAILDAASTGFVETERDELIRKGVLTPFHKLKGFERRL
QQPGPSNRRNVPKKEDGSDDLVAASVARAVRSMSEAAHARPTTKLLDPEALPKLDAPTRP
FQRLKTPLKYPRSPEREVKKNKHSQKIKKKKRPLPDRKWSKLISCEDIHLEESEDARGEV
VTSSCEDERPDNVQDIDDYETPYVTLEGGLKIPERIFHELFDYQKVGVQWLWELHCQRAG
GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIIVCPVTLLRQWKREAQKWYPKFHVELLH
DSAQDSVNRKKQAKSSDSDYESEGSFDSEHEGDISSRSNGKWVSLINRVLRSESGLLITT
YEQLRIVGGKLLNIEWGYAVLDEGHRIRNPNAEITLVCKQLQTIHRIIMTGAPIQNKLSE
LWSLFDFVFPGKLGVLPIFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLR
RMKADVNAHLPKKTEHVLFCSLTADQRSAYRAFLASTEVEQILDGNRNSLSGIDVMRKIC
NHPDLLEREHSCHNPDYGNPERSGKMKVVDQVLKVWKEQGHRVLLFTQTQQMLDILENNL
INGGYSYRRMDGLTPIKQRMALIDEFNNTDDVFIFILTTKVGGLGTNLTGADRVIIYDPD
WNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRF
FKSRDMKDLFTLNDNGESGSTETSNIFSQVSENVNVVGAQKDNQTNHIHPEVVHHAEGVA
AENGNRSEIAPSRRKGKEKADHSSGDADTYKKKSCGDVDEETHILRSLFDANGIHSAMNH
DIIMDAHDEEKMRLEEHASQVAQRAAEALRQSRMLRSRDSISVPTWTGKSGTAGAPSSVR
QKFGSTVNSRLTIVTKPSNELSSNVNGFAAGASTGKALSSAELLAKIRGNQERAVGAGLE
HQSGLASSSSNQARSINVGTSRSSKKIAGVQPEVLIRQICTFMQQRDGNSTSASIVQHFK
DRIPSEDLPLFKNLLKEIATLEKDADGSHWVLKPEYQQQ
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatgaggatagaattttgcttaatagtttgggtattgcgtctgcgaaccct
gaagatattgagcgtgacgtattagcagaggcgacaaggaataatgagaacaatggtgaa
ggtggagggggccctgaggaggaaactcttgagaagccagagggtattgacccatcatcc
accagcaaagcgaagctctaccataaattgagggctgtagaatttgaaatagatgccgtt
gcatccactgttgagcaggcgaggaatgttgcaagtgatgaagaccgtgctggtgatggt
aatgacagtggggggctaggtaataaggaggatagtggtcaggtttcgccaaatggctta
gacctccagcatgccttggctgctgataggctaagaagcctcgagaaaaccagggctcaa
cttgagaatgaactttcagatttgcgtaaggagagctcatcgaaaggtgttgaacataat
aaagtgttacgagatatggtcaaggaagagccaaggcggaagaggaagctgaaagatgtc
cagaaatcgggaaaaattatagaaaagaaaaagaagattgtatcatttgaggaggatact
ggttttgatgcaattttggatgcagcatctacaggctttgttgaaacggaaagggatgaa
ttgattcggaaaggagttttaactccttttcataagctgaagggctttgagcgccgtctt
caacaaccaggaccatctaataggcgcaatgtacctaagaaagaagacgggagtgatgat
cttgttgctgccagtgtagctagggctgtaaggtcaatgtcagaggctgctcatgctcgc
ccaacaaccaagctccttgatccagaagctttgccaaagcttgatgcacccacacgtcct
tttcaaaggctaaaaacacctttgaaatatcctcgatccccagaaagagaggtaaaaaag
aataaacattcacaaaagataaagaaaaagaaacggcctctgcctgacaggaagtggtca
aagctcatttcttgtgaggatatacacttggaagaaagtgaagatgcaaggggagaagtg
gtaacctccagttgtgaagatgaaaggccagataatgttcaagacatagatgattatgaa
actccttatgtaacacttgaaggtgggctgaaaatcccagaaagaatctttcatgaactt
tttgactatcaaaaagtgggagtacagtggttatgggaattgcattgccaaagagcaggt
ggaattattggagatgagatgggccttggtaagactatccaggtcttatcttttcttggt
gcactgcattttagtaatatgtacaaaccaagcatcattgtctgtcctgttacacttttg
cgacagtggaaaagggaagcacaaaaatggtacccgaagtttcatgtggagttgctacat
gattctgctcaggattctgttaataggaagaaacaagctaaatcatctgatagtgattat
gaaagtgaaggttcatttgacagtgagcatgagggagacatctcaagtagaagcaatgga
aaatgggtttccttaataaaccgtgttttgagatcagaatctggattgctcattacgact
tatgagcaactgcgcatagtagggggaaaattgcttaatattgaatggggttatgcagtt
ctggatgaaggtcaccggattcggaatccaaatgctgaaatcactctagtttgcaagcag
ctacagacaattcatcgcataataatgactggtgcaccaattcagaacaagctgagtgaa
ctgtggtctttatttgattttgtgttccctgggaagctgggtgtcctgcccatatttgag
gcagagtttgcagttcccatatctgtcggtggttatgctaatgcttcaccattacaagta
tctacagcttacagatgtgctgtggtcctgcgtgacttgatcatgccttatctcctccga
cgtatgaaggctgacgtgaatgcccaccttccaaagaagactgaacatgtcctcttttgc
agcctcactgcagatcaacggtctgcatatagagcctttctagcaagcactgaggtggaa
cagattttagatgggaataggaattccctttctggaattgatgtgatgcgtaagatttgc
aaccatcctgatcttcttgaaagggaacactcctgccataatccagactatgggaatcct
gaacgcagtggaaaaatgaaagttgttgaccaagtacttaaggtctggaaggaacaagga
caccgtgttcttctttttacacaaactcaacaaatgcttgatattcttgaaaataatttg
atcaatggtggctatagctaccggagaatggacggtcttacccccataaaacagagaatg
gccttaatagatgaatttaataacacagatgatgtctttattttcattttaacaaccaag
gttggtggtttgggaacaaatctaactggtgcagaccgggtgatcatttatgatcctgac
tggaacccttcaactgacatgcaggccagggagcgtgcttggcgcattggtcagaaacga
gatgtaacagtatatagattgatcacacgtggaaccatagaggagaaggtctaccaccgg
cagatttacaaacattttctcactaataagattttgaagaacccacagcagagaaggttc
tttaaatctcgagatatgaaggatctcttcacactgaatgacaatggagagagtgggtca
actgaaacatctaatattttcagtcaggtttctgaaaatgtaaatgttgttggggctcag
aaagataatcagactaaccatatacatcctgaagttgtgcaccatgctgaaggtgttgca
gctgaaaatggtaacagatcagagattgcaccttccaggaggaaggggaaagagaaagct
gatcatagtagtggtgatgcagatacttataaaaaaaaaagttgtggtgatgtagatgaa
gaaacacacatattaaggagtctttttgatgccaatgggatacatagtgccatgaaccat
gacataatcatggatgcccatgatgaggagaagatgagacttgaggagcatgcttcccaa
gttgcccaaagagcagcagaagcattgcgtcagtcacggatgctccgaagtcgtgacagt
atatctgtcccaacatggactgggaaatcaggaactgctggtgcaccatcatctgtgcgc
cagaagtttggttcaactgtgaactctcggttgacaattgttactaaaccatctaatgaa
ttgtccagcaatgtaaatgggtttgcagctggggcatctactgggaaggcactatcttca
gctgaactattggctaaaattcgaggtaaccaagaaagagccgttggtgctggactcgag
catcagtctgggttggcttcaagttcaagtaaccaggcaagatctatcaatgttgggact
tctaggtcatcaaagaaaatagctggagtgcagcctgaagtattgatacgtcagatctgt
acatttatgcagcaaagagatggaaatagcacttcagccagcatagttcagcactttaaa
gacagaatacctagtgaagatctgcccttgttcaagaatcttctgaaggaaatagcaaca
ctagagaaggatgcggatggatcacattgggtactaaagccagagtatcaacaacaatag
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