Quercus suber (cork oak): 112019766
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Entry
112019766 CDS
T05868
Name
(RefSeq) uncharacterized protein LOC112019766 isoform X1
KO
K06100
symplekin
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112019766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112019766
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112019766
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112019766
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112019766
U7-dependent histone pre-mRNA processing factors
112019766
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
SRA
Motif
Other DBs
NCBI-GeneID:
112019766
NCBI-ProteinID:
XP_023908056
LinkDB
All DBs
Position
Unknown
AA seq
1346 aa
AA seq
DB search
MMTMNPRENLASLINSAKSASDIPSKLEPLRQLKRDLIQQHDLALVSESLSLLSDRFAPV
RKFVTEMIGEIGLRHFEFLPEIVPVLITVLSDATPAVARQAITCGIELFRSILEKVAIQG
LYSSELDSSLKSSWSWVLTLKENIYSVAFQTGSGGTRLLALKFVEAVILLYTPDPNGSSE
PPPRDGKFAKFNISWLRGGHPILNVGDLSIEASQRLGLLLDQLRFPTVKSLSNSMIVVLI
NSLLTIAKQRPAFYGRILPVLLGLDPSSSVVNGMRVSAAKHALKNAFLTCLKCTHPGAAP
WRDRLIGALRDMEAGGLTDQAIPEVCKINGRLGEGKEDLPVIKEEKPTIKSCDVVDVNLG
SKRAGVPDSSDLAEDENVPGKRVRSTPSASEELTRESDKNNTMSQDDISTIGPTTSRGDG
DNGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRHLPPNHSKGDGGE
ESLLNMTIVGSDSKAKYPPSFIADVLSLSSTFPPIASLLNAHRSESNDIVQKPCDEKEDV
VAEADSVLACDGLDHGSENALLPTDLPASSVVSSGMEIGCFPISSDIHDVGDLESEIPGL
DSSAHADGLSETHVTSSMASTDLEEASQDQVTSLGQSTLKLLPSMSTEKSEELSPKAAVT
DVSSLVSSTATSVGLSCNFVLPKMSAPVVYLDDEQKDYLQKMAFIRIVEAYRQVAVAGGS
QVRFSLLAYLGVEFPSELDPWKLLQKHILEDYMGHEGHELTLRVLYRLYGEQAEDRDFFS
STTAASEYENFLLTVAETLRDSFPPSDKSLSRLLDEAPDLPKSVLKLLEDMCSPGNCDKA
EELQSGDRVTQGLSAVWRLIMLRPSIRDVCLKVALQSAVHHLEEVRMKAIRLVANKLYPI
SSIAKQIEDFAKETLLSVINGDATERTDTEGSVTEMQKDSHLEKPVDEHPSVSVNSKDIS
SDTHQSSTCQSVSSLSVSEVQRCMSLYFALCTKKHSLFRQIFIIYKSTSKTVKQAVHRQI
PILVRTMGSSSDLLEIISDPPSGSKNLLMQVLHTLTDGTIPSSELLFTIRKLYDSKLKDI
EILIPVLPFLPKDEVKLIFPNIVNLPLDKFQAALARLLQGSSHSGPVLTPAEVLIAIHGI
DPDKDEIPLKKVTDACNACFEQRQIFSQQVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFP
ALVEFIMEILSRLVSKEIWKYPKLWVGFLKCALLTKPQSFGVLLKLPPAQLESALTRTAA
LKAPLIAHASQPNIRSSLPRSVLVVLGLAPESQTSNLAQTGVAPDSHNSSQVQTSQAQTS
QAQTGDTGNSDKEVLTEKSKESSGAS
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatgaacccgagagaaaacctcgcgagtctaataaactcggcaaaatcggcc
tcggatataccttcaaagctggagccattgcgtcaattgaagcgcgatttgattcaacaa
cacgaccttgccttggtctccgagtccctctctcttctctccgaccggttcgctccggtt
cgcaagtttgtcaccgagatgattggtgaaattggattgaggcattttgaattcttaccg
gagattgtgccggtgttgattacggttttgagtgatgctacgccagctgttgctcgacaa
gccatcacttgtggtattgaattgtttcgttcgattcttgaaaaagttgcaattcagggc
ctatactcaagtgagttggacagttcactgaagtcatcatggtcatgggtgttaacactc
aaggaaaatatatactcagtagcttttcagacaggaagtggtgggacgaggttgctggca
ttgaagtttgttgaggcagtcattcttctttacacacctgatcctaatggctcttcagag
ccccctcctcgtgacggaaagtttgcaaaattcaacatttcttggcttcgtggtggtcat
ccaatacttaatgttggagatttgtcaattgaggccagtcaacgtttgggtttattgctt
gatcaactcaggtttccaacagtgaaatctcttagcaactcaatgatcgtagtgcttatc
aatagccttttaacaatcgcaaagcaaaggcctgcattttatggaaggattctgcctgtt
ttacttggtttggatccctcgagctctgtagtcaatggaatgcgtgtttccgcagcaaag
catgccctaaaaaatgccttccttacctgcttgaaatgtacacacccgggtgctgcaccg
tggcgggatcggttgattggtgccttgagggatatggaagctggagggttgactgaccaa
gctattccggaagtgtgcaagattaatggaagactaggggaagggaaagaagatttacca
gttattaaggaagagaaacccacaattaaatcatgtgatgttgtggatgttaatttgggg
agcaaaagagctggagtaccagacagcagtgatctggctgaagatgaaaatgtgcctgga
aagcgtgtcagatcaacacctagtgcctcagaggaattgactagagagtcggataagaat
aacacgatgtctcaggatgacatttctacaattggaccaaccacttccagaggagatggt
gataatggacctgtgcagcaacttgtagctatgtttggtgccttggttgcacaaggtgaa
aaagctgttggttctttagagattcttatctcaagcatctctgctgacttgctagcagag
gtagtgatggctaatatgcgacaccttcctcccaatcattccaaaggtgatggaggtgaa
gagtcgctgctaaacatgaccatagttggtagtgattctaaagctaaatatcctccatca
tttatagcagatgttctatcactttctagtactttcccaccaatagcttcactgttaaat
gctcaccggtcagagtccaatgatatagtgcagaaaccttgtgatgagaaagaagatgtt
gtggctgaagctgatagtgttcttgcatgtgatggcttggaccatggatcggaaaatgca
ttgttgcccactgatttaccagcttcctctgttgtgtcatctggaatggagataggctgc
tttcctatttcatctgatattcatgatgtgggggatctagagagtgagatacccggcctg
gattcttctgctcatgctgatggattgtcagagacgcatgttacatcctccatggcctcc
actgacttagaagaagccagtcaagatcaagttacaagtttgggtcagtcaacacttaag
ttacttccatctatgtcaacagaaaagtctgaggagctcagcccaaaagcagctgttaca
gatgtcagcagcctggtctcatcaacagcaacttctgttggattgtcttgtaattttgtc
ttgcccaagatgtcagcgcctgttgtttaccttgatgatgaacagaaggattatttgcaa
aaaatggctttcattcgtattgttgaggcatataggcaagttgcagtcgctggaggttca
caagttcgcttttcactgcttgcatatttaggggttgagtttccctcagagttagatcca
tggaaacttttacaaaagcatatcttggaagattatatgggtcatgagggacacgagttg
accttgcgtgtcctctacaggttatatggcgagcaagcagaagatcgcgacttcttttct
tctacaactgcagcttctgaatatgaaaacttccttcttactgtggcagaaacgcttaga
gattcttttccaccttcagacaaatcattaagtagattacttgatgaagctcctgatctg
cccaagtcagttttaaaattgttagaggacatgtgttctcctggaaactgtgataaagct
gaggagttacagagtggggatcgagtaactcaaggtctaagtgctgtgtggagattgatt
atgctgaggccttctattcgagatgtctgcttgaaagttgccttacagagcgcggttcat
catttggaggaagtgcgtatgaaggcaatacgactggtggcaaacaagctttatccaata
tcatccattgctaaacaaattgaagattttgcaaaagaaacattgctctctgtaataaat
ggtgatgcaacagaaagaacggatactgaaggatcagtcactgaaatgcagaaggattct
catctagaaaaacctgtggatgaacatccctcagtgagtgtgaacagtaaagatatttct
tctgatactcatcaatcgagcacatgtcagagtgtgtcctccctttcagtctccgaggtc
cagcggtgcatgtcactgtattttgccttatgtaccaagaagcactcccttttccgccaa
atatttattatctataaaagcacatcaaagacagttaaacaggcagttcatcgccagatc
ccaatactcgtccgtactatgggctcatcatcggatcttcttgaaatcatttcagatcct
ccaagtggaagcaagaacctcctaatgcaggttttgcatacactgacggatgggacgatt
ccctcttcagaactactttttaccattaggaagttatatgattccaaactaaaggatata
gagattcttattccagtattaccgttcctaccaaaggatgaggttaagctgatatttccc
aatattgtgaatcttccactggataagttccaagcagcacttgctcgcttactacagggt
tcatctcattctggtccagtgctcactccagctgaagttttgattgctatccatgggatt
gatcctgacaaagatgagatccccttgaagaaggtcacagacgcatgcaatgcatgtttt
gagcagaggcaaatattctcccaacaagtacttgcgaaggttttgaatcaattggttgag
cagattcctctccctttattgttcatgcggacagtattacaagctataggtgctttccca
gcgctggtggaatttataatggagatcctatctcgtcttgtcagcaaggagatttggaaa
tatccaaagttgtgggtaggattcttgaagtgtgcactcttgacaaagcctcagtcattt
ggtgtattgcttaagttacctccagcacagctagaaagcgcattgaccagaactgcagct
ctgaaagcacctctgattgctcatgctagccaaccaaacatccgatcttcacttccaagg
tctgtgttggtggttctgggactggcacctgaatctcagacttcaaatctggcacaaact
ggagtagccccagattctcacaattcaagtcaggttcaaacaagtcaggctcaaacaagt
caggctcagactggagatacaggcaactcagataaggaggtgctgacagagaaatctaaa
gaatcatctggtgctagctga
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integrated database retrieval system
