Quercus suber (cork oak): 112020147
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Entry
112020147 CDS
T05868
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03030
DNA replication
qsu03420
Nucleotide excision repair
qsu03430
Mismatch repair
qsu03440
Homologous recombination
qsu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112020147
03420 Nucleotide excision repair
112020147
03430 Mismatch repair
112020147
03440 Homologous recombination
112020147
03460 Fanconi anemia pathway
112020147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
qsu03000
]
112020147
03032 DNA replication proteins [BR:
qsu03032
]
112020147
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112020147
Transcription factors [BR:
qsu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112020147
DNA replication proteins [BR:
qsu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112020147
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112020147
MMR (mismatch excision repair)
112020147
DSBR (double strand breaks repair)
HR (homologous recombination)
112020147
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
zf-CCHC
DUF223
RADX
zf-CCHC_2
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
112020147
NCBI-ProteinID:
XP_023908473
LinkDB
All DBs
Position
Unknown
AA seq
788 aa
AA seq
DB search
MLILFTASRIIIIVDLDLIIEKSDLIGEPVPVAKPVVVQSPAGQPGTGTGNPQSFPGSSP
VGGLVNKPNAVGASMEPPRINQSYGSAYSHNSDSGRYAAPNMPAAYPKTESSAGYPGSVS
LGGSYGEQSFRNPRSEASRPPLNTSARQPQPVYQQPSSMYTNRGPIARNEAPPRIIPIAA
LNPYQGRWTIKARVTAKGELKHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFFNQ
IEVGKVYQISKGSLRPAQKAYNHLPNDQEIFLESTSIVQPCFDDDSSIPQQQFHFRHISD
IEGMDNNSIMDIIGIVTFIGPPASIMRKNGTETQRRILHLKDMSGRSVELTLWGNFCNAE
GHSLQNMCDSGLFPVLAVKAGRVNDFNGKSLGTISTSQLFIEPNYPEAHSLRRWFDEEGR
NIPSISISREVSVGRTDIRKTISQIKDERLGTSEKPDWITVSATIAFIKVDNFCYTACPI
MIGDRQCNKKVSNNGDGKWRCDRCDQSVEECDYRYILQCQIQDHTGITWVTVFQECGEEI
MGIPAKQLYFLKYEEQDDDKFGEILRKVLFTKYIFKLKVKEETFSDEQRVKSTVVKADKV
NFSTESRFLLDLMEKLKAGNYSSIASKAESITPNPGLNNTSVGNIGNRQPMPPVVNYTGN
SINSGKEFSAPLHQVGQYGNQYNSYAMAATGTPGSYLQCNSCGGAGHSSANCPSIMNGPG
QSMGGGYASRVSSGPSVSGSSGECFKCHQPGHWARDCPGLSTVPPAYGSSGVTPGRYGGV
SKQQFGGY
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgttgattcttttcactgcaagcaggattattatcattgttgatttggatttgataatt
gagaaaagtgatctcattggagaacctgtaccagtggcaaaacctgtggttgtacaatcc
ccagctggccaaccagggacaggaactgggaatccccaatcatttcctggaagttcacct
gttggtggtctggttaataaaccgaatgcggttggagcatctatggagcctcctagaata
aatcaatcatatggcagtgcttattctcataattctgactcagggagatatgctgcacca
aatatgcctgctgcttaccctaagacagagtctagtgctggatatcctggatcagtgtcg
ttaggcggttcatatggtgagcagagtttccgcaaccctagatcagaagcttcgcggcca
cctctaaatacctctgcccgccaacctcagcctgtgtatcaacaaccatcttcaatgtac
actaacagaggaccaatagctagaaatgaagctccccctaggataattcccattgctgct
ctgaatccataccagggtaggtggacaattaaggctagagttacagcaaaaggagaactt
aagcactacaataatccccgcggtgatggtaaagtattcagttttgatcttcttgattct
gatggtggagaaattcgggtaacttgctttaatgctgtggctgatcaattcttcaaccag
attgaagttggtaaggtttatcagatttccaagggaagcttaagacctgctcaaaaagct
tataaccacctcccaaatgaccaggaaattttcttagagagcacgtcaatagtacagcct
tgctttgacgacgacagctcaattccacagcagcagtttcacttccgtcatataagtgat
attgaaggcatggacaacaacagcattatggacattattggtattgtaacttttatcggt
ccccctgcttcaataatgagaaaaaatggtactgaaactcagcggagaatcctacacttg
aaagacatgtctggccgaagtgttgaattaactctgtggggaaacttttgcaatgcagaa
ggacacagtctgcaaaatatgtgtgattcagggcttttccctgttctagctgtgaaagca
ggtagagtaaatgacttcaatgggaagtcattgggtactatctctaccagtcaactattt
attgagccaaattatccagaagctcacagcctgagaagatggtttgatgaggaaggaagg
aacatcccatctatctcaatttccagggaagttagtgtgggtaggacagatattcgaaag
actatatcgcaaattaaggacgagaggctaggaacatccgagaagccagattggatcact
gtcagtgcaaccattgcattcataaaggttgacaatttctgctacacagcatgtcctatc
atgattggtgatcgacaatgcaacaaaaaggtttcaaataatggggatgggaaatggcgg
tgtgataggtgtgatcagtcagttgaggaatgtgactacaggtatatactccagtgccag
atacaagaccatactggcataacatgggtaaccgtatttcaggaatgtggtgaggagatc
atgggtattcctgcaaaacaattgtattttctgaagtatgaagagcaagatgatgataaa
tttggagaaatccttcgtaaggttctttttactaaatatatattcaagttgaaagtaaag
gaggagacatttagtgatgagcaacgtgtaaagtcaacagtggtcaaagcagataaggtg
aatttttcaactgaatccagatttcttttggatttgatggaaaagctgaaagcagggaat
tatagttctattgcttcaaaggctgaaagtatcactcctaaccctggattgaataatact
tcagttgggaatattggaaataggcaaccaatgccaccagtggtgaactatactgggaac
agtatcaattctggtaaagagtttagtgcaccattacatcaagttggtcagtatggaaat
cagtataatagttatgccatggctgcaactggcactcctggttcatatctacaatgtaac
agttgtgggggtgctggtcatagctctgcaaattgtcctagcattatgaatggtcctgga
cagtccatgggagggggctatgctagtagagtttcttctggtccaagtgttagtggaagc
tctggtgaatgctttaaatgccatcaacctgggcattgggcaagagattgtccggggttg
agcactgttcctccagcttatggaagcagtggcgttactcccgggagatatgggggtgtt
tcaaagcaacaatttggtggttattga
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integrated database retrieval system
