Quercus suber (cork oak): 112023528
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Entry
112023528 CDS
T05868
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03030
DNA replication
qsu03420
Nucleotide excision repair
qsu03430
Mismatch repair
qsu03440
Homologous recombination
qsu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112023528
03420 Nucleotide excision repair
112023528
03430 Mismatch repair
112023528
03440 Homologous recombination
112023528
03460 Fanconi anemia pathway
112023528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
qsu03000
]
112023528
03032 DNA replication proteins [BR:
qsu03032
]
112023528
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112023528
Transcription factors [BR:
qsu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112023528
DNA replication proteins [BR:
qsu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112023528
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112023528
MMR (mismatch excision repair)
112023528
DSBR (double strand breaks repair)
HR (homologous recombination)
112023528
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
OB_MEIOB_N
DUF223
zf-like
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
112023528
NCBI-ProteinID:
XP_023911904
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MAVNLTPNAIAAIIAGDVNSKPLVQILDIKLIAAAAQPKERYRLLLSDAVSSQHAMLATQ
LSDRVKSGQVRKGSVVQLIDYICTSSQNRKIIVVLNMETIIPECEIIGNPKSLVESDSMA
QKPLPNSSLDHSTRVSNNRFNAQNPGQSVQSFPPTVQPPYQPPPNYRNHGPMLKNDAPAR
IIPITALNPYQGRWAIKARVTAKGDMRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV
DRFYDAIEIGKVYLISKGNLKPAQKNFNHLKNEWEIFLETTSTVELCPEEDGSIPRQQFS
FRPISEIENAENNSILDVIGIVISVNPSVPIMRKNGMETQRRILNLKDGSGKSVELTLWG
EFCNREGQKLKEMIDSGSFPVLAVKAGKVNDFNGKSIGSISSTQLFIDPDFPEACGLRNW
FDRGGKNVASVSISREIMPGGSKNEIRKTVSQIKDEGFGRSDKPDWVTVKATISFIKTDT
FCYTACPLMIGDRQCNKKVTKSGNMWTCDRCNQEFEECDYRFLLQAQIQDHTGLTWVTAF
QESGEEILGCSAKELYLLKYEEQDDDKFGGIIRSRLFNQYVFRLKIKEEMYGDEQRVKIT
IVKADNVNHSSECRYMLDLISKFTR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaatctgacgccgaatgcgatcgcggcgataatcgccggcgacgtgaactcg
aaaccgctggttcaaatccttgatatcaagctcatcgccgccgcagcgcagcctaaagag
cggtaccggttgctcctatccgacgccgtttcgtctcagcacgccatgctcgccactcaa
ctctccgaccgagtcaagtccggccaagtccgcaaaggctccgtcgtccaactgatcgac
tacatttgcacctcctcccaaaaccgcaagataattgttgtgctgaacatggaaacaatt
ataccggaatgtgagataattgggaatccaaagtcactggttgaatctgattcaatggct
caaaaaccgttgcccaatagtagtttagatcactccacaagggttagcaataaccgcttc
aatgcccaaaatcctggtcagagtgtgcagagttttccaccaactgttcaacctccatat
caaccacctccaaattacagaaatcatggtccaatgttgaagaatgatgcgccagcacgt
ataattccaattactgctttgaatccttatcaggggcgatgggctatcaaggcaagagtt
actgcaaaaggggatatgcgtcgctataacaatgcacggggagatgggaaggtgttctct
tttgacctccttgactctgatggcggagaaatacgtgtcacatgcttcaatgctgttgtt
gaccgtttctatgatgctattgagattggtaaagtttatttgatctcaaagggaaacctg
aaacctgctcagaagaacttcaaccatctgaagaatgaatgggagatatttctggagaca
acttccactgtggagctttgcccagaagaagatggttctataccaaggcagcaattctcc
ttcaggcctatcagtgaaattgagaatgcggagaacaattccatacttgatgttattggc
attgtgatatctgtgaacccctcagtaccaattatgagaaagaatgggatggaaactcag
agaagaattttgaatctgaaggatggatctggcaaaagtgttgagctaaccctttggggg
gaattctgcaacagggaaggtcaaaagctgaaagagatgattgactctgggtcatttcca
gttttagctgtcaaagctgggaaggttaacgacttcaatgggaaatcaatagggtcaatt
tcttctacacagctcttcatagacccagattttcctgaggcttgtggcttgagaaactgg
tttgatcgaggtggaaaaaatgttgcttctgtgtccatttctagagaaattatgccagga
ggatctaagaatgagatacgtaaaacagtgtctcagattaaggatgagggtttcggaaga
tcagataagccagattgggtcacggtgaaggcaaccatctctttcattaagacagatact
ttctgttatacagcttgcccattgatgattggagatagacagtgcaataagaaagtgaca
aaatcaggaaacatgtggacttgtgacaggtgcaatcaagagtttgaggagtgtgattat
agattccttcttcaagcccaaattcaagatcatacaggactgacttgggtgacagccttc
caagaatctggggaagagatcttaggttgctccgcaaaggagttgtacttgttgaagtat
gaagaacaggatgatgataagtttggaggaataatccggagcagactatttaaccagtat
gttttcaggcttaaaatcaaagaggaaatgtatggtgatgaacaaagggtgaagatcacc
atagttaaggcagataatgtgaaccattcttccgagtgcagatacatgcttgatttgatc
tcaaagtttactaggtaa
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