Quercus suber (cork oak): 112025737
Help
Entry
112025737 CDS
T05868
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112025737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112025737
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112025737
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112025737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112025737
NCBI-ProteinID:
XP_023914192
LinkDB
All DBs
Position
Unknown
AA seq
669 aa
AA seq
DB search
MSGLLNSSLNSSASNLPDSTGRSFATSFSGQSGAASPVFHHTGTIQGLHNIHGSFNVPNM
PGTLTSRNSAINNVPSGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFSNSTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVG
GGNIGRSITSGGGLSVPGLSRLNLGGNSGSGSLNVQGQNRLMSGALPQGSPQVISMLGNS
YPTGGVTLSQGHVQAVNNLSSMGMLNDVNSNDSSPFDINDFPQLTSRPSSAGGPQGQLGS
LRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNTVSMMQSQH
FPMGRSAGFNLGGTYSSHRPQQQQQQQHAPSVSSSGVSFSPLNNQDLLHLHGSDMFPSSH
STYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQSQSQFRLQQMSTVNQSFRD
QGIKSAQAQAAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSPENLHKTF
GSPWSDEPAKGDPEFTVPQCYYAKQPPPLHQGYFSKFNLETLFYIFYSMPKDEAQLYAAN
ELYAKGWFYHKEHRLWFIRAPNMEPLAKTNTHERGSYHCFDPNTFEMIRKDNFIVQYEMM
EKRPLLPQH
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctctcaacagttcggcttcaaaccttccagatagtact
gggcgatcttttgctacgtctttctctggtcagtctggtgctgcctcccccgtttttcat
cacactggaaccattcaggggctgcacaatattcatgggagctttaatgttcccaacatg
cctggtacactaacatcaagaaactcagcaataaataatgttccttctggtggggttcaa
cagcctactggcagcctttctagtgggcgatttgcgtcaaataatcttcctgtcgcgctc
tctcagttatctcatggcagctcccatggacattcaggagtcacaaatagaggaggtatt
agtgtcgtaggaaaccctggatttagtaatagcacaaatggagttggcggttctattcct
ggaattctcccaacctctgctgcaattggtaaccggaatgctgttccaggattgggagta
tccccaattttgggaaatgcaggtcctcggattacaagttctatgggaaacatggttggt
ggaggcaacattgggaggagtataacgtccggtggaggactatctgttcctggactttct
cggctaaatttgggtggaaatagtggatctggaagtttgaatgtgcaaggacaaaatcga
ttgatgagtggtgcacttccacaaggttctccgcaggtaatttctatgctaggaaattcc
tatcccactggtggagttacactttctcaaggccatgtccaagcagtaaataatttaagc
tctatgggaatgttaaatgatgtgaactctaatgacagctctccttttgatatcaacgac
ttccctcagttgacaagtcgtcctagttctgctggagggccccaaggacaactgggttca
ctacgcaagcaaggtcttggtgttagtcctattgttcaacaaaaccaagagtttagcatt
caaaatgaagattttccagctttaccaggatttaaaggtggtaatgcagattatgcgatg
gatatgcaccagaaggaacaacttcatgacaatactgtttcgatgatgcaatcacagcac
tttcctatgggtaggtctgctggatttaacttaggtggaacgtattcatcccatcgtcct
cagcagcaacagcagcaacaacatgctccatcagtcagtagtagtggtgtctctttttca
cctttaaacaatcaggaccttctccatttacatggctcagatatgttcccatcttcacat
tcaacgtatcactcccagaccagtgggcctcctggcattggactaagacctctaaattct
ccaaatacagtatctggtatgggatcatatgatcagctcatccagcagtatcaacaacac
cagagccagtctcaatttcgtctgcaacaaatgtcaactgtcaatcagtcatttagggat
cagggcattaaatccgcgcaggcccaggctgcacaatctactccagatccatttggtttg
cttggcttgttaagtgtaataaggatgagtgatcccgatctgacatcccttgctcttgga
attgacctgacaacccttgggttaaatttgaattcacctgaaaatcttcacaaaactttt
ggttctccatggtctgatgagccggctaaaggtgatccagaatttactgtgccacaatgt
tattatgccaaacaaccacctcctttacatcaaggttacttttcaaagtttaatttggaa
actttattctacatattttacagcatgccaaaagatgaagcccaattatatgctgctaat
gaactttacgctaaaggctggttttatcacaaagagcaccgattatggttcataagagcc
cccaacatggagccgcttgctaagacaaacactcatgagagaggatcttatcactgtttt
gatccaaacacatttgaaatgatccgcaaggataatttcattgtccagtatgagatgatg
gaaaagagaccgttgctacctcaacattaa
DBGET
integrated database retrieval system
