Quercus suber (cork oak): 112027591
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Entry
112027591 CDS
T05868
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112027591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112027591
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
112027591
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
112027591
NCBI-ProteinID:
XP_023916012
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MRTRNESKRQKQSSGRDNAKKALPESGNRSCLESHDDSGTLADISREAVGRLLRHAKKRD
SSGKEKHYNNLSQHDSIGMTEGGPKRDDKLDVDSGAQWNISEAEGCSKDPMGKTAHEKKV
DEGNLQQFLSENQEELNDSDWEDGSIPISDSTCNLPVTIEFSETSNSGVRKPVRRASAED
KELAELVHKVHLLCMLARGRLVDRACDDPLIQASLLSLLPPHLLNIAKVTELTADALCPL
VLWFQNSFHVKSSTNAERSFPLALAFALETHEGTPEEIVALSVALFRALNLTTRFVSILD
VSSLKPEADRSESFIQDASRSSKGIFKTSTLMVAKPKHASVSPVKSSSCNESGNICETSQ
RGSCKSMDNIAQSKDSPVAGELDAIMSDSLHCEARNDISDASLTKKSQGLNRKGDLEFEM
QLEMALTATAVVTQESKIESDVKDLNSSNFSSPLKRMKRIVSEESPTSSQGISTAVGSRK
VGSPLYWAEVYCNGDNLTGKWVHVDVVNAVIDGELKVEAMAAACKTSLRYVVAFAGQGAK
DVTRRYCMKWYKIGSHRVNSIWWDAVLAPLRELEAGATAGMVHTEKQQIEALTEHEKVKA
SRKLDNPTRDDILGGANLHGKFGLEISKKSGKSFVASRSSLEDMELETRALTEPLPTNQQ
AYKNHQLYAIERWLTKYQILHPKGPVLGFCSGHPVYPRSCVHTIKTKERWLREGLQIKAN
ELPVKELKRSAKLQKVQVPEDDECGGGNYEGTVKLYGKWQLEPLNLPHAVNGIVPKNERG
QVEVWSEKCLPPGTVHLRLPRVFYVAKRLEIDYAPAMVGFEFRNGHSHPVFDGIVVCAEF
KDAILEAYSEEEERREAEEKKRSEAQAISRWYQLLCSIITRQRLNNRYGDSLSSQTSTET
NTQHINNKLNAPVGGGDEGKQSHVCKTEDINHAKLDAQASLPEDHEHVFLTEDQTFDEES
LVLTKRCHCGFSVQVEEL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccaggaacgagtccaagcggcagaaacaatcttctggtagggacaatgctaaa
aaagctctaccggaatcaggaaacagaagctgtttagagtcgcatgatgacagtggaaca
cttgctgacatatcaagggaggctgttggcagacttcttagacatgccaagaagcgtgac
tcttccgggaaagagaaacattacaacaacctgagccagcatgattcaattggcatgaca
gagggtgggccaaaaagagatgataaattagatgtggattcaggggcccagtggaatatt
tcagaggctgaaggttgtagtaaggatccaatgggaaagaccgcccacgaaaagaaagtt
gatgagggaaatttacagcaattcctctcagaaaatcaggaagaattgaatgactcggac
tgggaagatggttcaatacccatttcagattccacatgcaatcttccagttacaattgaa
tttagtgagacatcaaattctggtgtaaggaaacctgttcgtcgagcttctgccgaggat
aaggaattggcagagcttgtgcataaggttcatttgctttgtatgcttgcacgtggcaga
ttagttgacagagcttgtgatgatcctcttattcaggcttctttactgtctcttctacct
ccacacttgctgaacatagcaaaggtcacagaacttactgcagatgctttgtgtcccctt
gttctttggtttcaaaatagcttccatgttaaaagctcaaccaatgcagagaggtcattt
cctttggctttggcctttgctcttgaaactcatgaagggactccagaggagattgttgca
ttgtctgtggcactatttagagctttgaatcttacaacccggtttgtgtccattttggat
gtttcctccttaaaaccagaagctgataggtctgaatctttcattcaagatgcaagcaga
tcgagtaaggggatatttaaaacttcaacactaatggtggctaaaccaaagcatgcttcg
gtctctcctgttaaatcatcttcatgcaatgagagtggcaatatctgtgaaacttctcag
aggggttcatgcaaaagtatggataacattgctcagtccaaagattcacctgttgctggt
gagctggatgctataatgtcagattcattacattgtgaggcaagaaatgatatctctgat
gcaagccttaccaagaaatctcaaggactgaataggaaaggggatcttgagtttgagatg
cagttggaaatggctctaactgcaacagcagttgtgactcaggagagcaaaatagaatca
gatgtgaaagacttgaactcatcaaatttctcttctccactgaaaagaatgaaaagaatt
gtaagtgaagaatctcctacttcttcccaggggatctctactgctgttggctcaagaaaa
gtaggatctcctttgtattgggcagaagtatactgcaacggtgacaacttgactggaaag
tgggtgcatgttgatgttgtcaatgcagttattgatggggagctgaaggttgaagctatg
gctgctgcatgcaaaacatctttgagatatgtagttgcttttgctgggcaaggggccaaa
gacgtgacacgcaggtattgtatgaagtggtacaagataggatcacatcgagttaattca
atttggtgggatgcagtgttggcgccactgagagagttagaggcaggagccactgcaggc
atggtccatactgaaaagcaacaaattgaggccttgactgaacatgagaaagttaaagca
tccagaaagttggataatccaactagggatgatattctaggaggtgctaacttgcatggg
aagttcggcctagaaatctcaaaaaagagtggcaaatcttttgttgctagcaggagctct
cttgaggacatggagttggaaactagggcattaactgagcctcttccaactaaccagcag
gcctataaaaaccatcaactttatgctattgaaaggtggcttaccaagtatcagatactt
catccaaagggtccagttctcggcttttgttctggtcatccagtttatccacggagttgt
gtacacacaatcaagacaaaagaaagatggctacgggaagggctgcaaattaaagcgaat
gagcttcctgtgaaggagttgaaacgttctgcaaagcttcaaaaagtacaggttcctgaa
gatgatgaatgtggtgggggcaattatgaaggaacagttaaactttatgggaagtggcaa
ctggaaccattgaatctgcctcatgctgtaaatggaattgttccaaagaatgaacgtggt
caagtggaagtttggtctgagaagtgcctcccacctggtactgtgcacttgaggttaccg
agggtgttttatgttgccaagagattggagattgattatgcgcctgccatggttggtttt
gaattccgaaatggacactcgcatcctgtctttgatggtattgtggtgtgtgctgagttc
aaggatgcaattttagaggcatactcagaagaagaagaaaggagagaggccgaagagaag
aaacgaagtgaagcacaagctatttctaggtggtatcagcttctttgttccatcataact
cggcaaaggttgaacaaccgttatggtgacagcttgtcatcacaaacatccactgagacc
aacactcaacatattaataacaaattaaatgcaccagttggtggaggtgatgaaggcaag
cagtctcatgtatgcaagacagaagacataaatcatgccaagttggatgctcaagctagc
ctgccagaagaccatgagcatgttttcttgacagaggaccagacttttgatgaggagagt
ttggtgctgacaaagcgatgtcattgtggattttcagtccaagtggaggaattgtag
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