Quercus suber (cork oak): 112029286
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Entry
112029286 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03013
Nucleocytoplasmic transport
qsu03015
mRNA surveillance pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112029286
09122 Translation
03013 Nucleocytoplasmic transport
112029286
03015 mRNA surveillance pathway
112029286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112029286
03041 Spliceosome [BR:
qsu03041
]
112029286
03009 Ribosome biogenesis [BR:
qsu03009
]
112029286
03012 Translation factors [BR:
qsu03012
]
112029286
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112029286
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112029286
mRNA cycle factors
Stress granule specific factors
112029286
Spliceosome [BR:
qsu03041
]
Complex C
Other components
EJC/TREX
112029286
Ribosome biogenesis [BR:
qsu03009
]
Eukaryotic type
90S particles
Helicases
112029286
Translation factors [BR:
qsu03012
]
Eukaryotic type
Initiation factors
eIF-4
112029286
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Helicase_RecD
CMS1
TniB
Motif
Other DBs
NCBI-GeneID:
112029286
NCBI-ProteinID:
XP_065631711
LinkDB
All DBs
Position
Unknown
AA seq
380 aa
AA seq
DB search
MSDIGGASMVRQNPRRVTAPEEALEFETSKEVQVVTTFAEMGIKDDLLRGIYQYGFEKPS
AIQQRAVVPILQGRDVIAQAQSGTGKTSMIGLTVCQTVDTSSREVQALILSPTRELASQT
EKVILAMGNFISIKVHACIGGKSVGDDIRKLENGVQVVSGTPGRVCDMIKRRTLKTTHIK
LLILDESDEMLSRGFKDQIYDVYRYLPPVLQVCLISATLPHEILEMTNKFMTDPIRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDPYDTLTITQAVIFCNRKXKVDWLTEKMRTNNF
TVSSMHGDMPQKERDAIMEEFRAGQTRVLITTDVWARGIDVQQGVAINFVKSDDIKILRD
IEQYYSTQIDEMPMNVADLI
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacatcggcggcgcaagcatggtccgccaaaacccacggcgggtcacggcgccg
gaggaggcgctggagttcgagacctcaaaggaggtccaggtagtaacgaccttcgcagag
atgggaatcaaagacgacctgctccgcggcatctaccagtacggcttcgagaagccctcc
gcgattcagcagcgcgccgtggttccgattctccagggccgagatgtcatcgctcaggcc
cagtccggtaccggaaaaacctccatgattggcctcaccgtttgccagaccgtcgatacc
agcagcagagaagttcaggccttgatcttgtcaccaacaagagaattggcatctcagaca
gagaaggtgatattggcaatgggtaatttcataagtattaaagtacatgcatgcattgga
ggcaagagtgtcggtgatgatatcagaaagctagaaaacggtgttcaggtggtgtctgga
actccaggcagagtttgtgacatgatcaaaaggagaacactgaaaactacacacatcaaa
ttgttaattcttgatgaatctgatgagatgttgagcagagggttcaaggatcagatttat
gatgtatacagatatctcccaccagtgcttcaggtttgcttgatttctgctacccttcct
catgaaattttggagatgacaaacaagtttatgacagatcctatacggatacttgtgaaa
cgtgatgaattgactctggagggcatcaaacaattttttgttgccgtggaaagggaagag
tggaagtttgatactttatgtgatccttatgatacccttacgatcacccaagctgtcata
ttctgcaacagaaagtgaaaggtggattggctaacagaaaagatgcgtaccaataacttc
actgtttcatcaatgcatggagacatgcctcaaaaggagagagatgcaattatggaagag
tttcgggctggtcaaacccgtgtcctaataacaacagatgtttgggccagggggattgat
gtccaacagggtgttgcaataaactttgtcaaaagtgatgatattaaaatcctacgagac
attgagcagtactacagtactcagattgatgaaatgccaatgaatgttgctgatctaata
taa
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