Quercus suber (cork oak): 112029998
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Entry
112029998 CDS
T05868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112029998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
112029998
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112029998
Spliceosome [BR:
qsu03041
]
Complex A
U2 snRNP components
U2 related factors
112029998
Complex B
112029998
BRITE hierarchy
SSDB
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Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
112029998
NCBI-ProteinID:
XP_023918450
LinkDB
All DBs
Position
Unknown
AA seq
1232 aa
AA seq
DB search
MDEGKHKSRREDSERSEVEDLKESKRSHRDRDRERDKERNGERHRDRVKKDRDSRRSERE
KSSESDDKERNGERHRERDREKKDRDSRRSEKEKSSESDEKERNGERHRDQEREKKDRDS
RRSEREKSSDSDGKHDRIREKHRDRDKDKDRTRSRDDDRERERAREKKRERDREERERER
EREREKEKRERAREKEREREREREKRERDREERERERERERERREREREREKERERERRI
RDREKHREADSDDGDDNHREHDRKRRRRDDDGYKDRDRERSRSNSRPRKHRADSEESPRK
KSTEDDSDKDNKLTREEELKDEQRRLEEEMEKRRRRVQEWQETKRKNEEAEREKRGEANA
EEPMSGKTWTLEGESDDEEVPPMGKPETDMDIDENVNPTDNEVGDSMLVDSEDGIASTSQ
NGADGDAGDEEIDPLDAFMNSMVLPEVEKLNNTSAPPNFDDMDVDSKNKPKKDELSNGEQ
PRKGSNKSMGRIMQGEDSESDYSDLENDEDPVQEEDDDEFMKRVKKTKAEKLSVVDHSKI
DYEPFRKNFYIEVKEIAKMTSEEVVAYRKELELKIHGKDVPKPIKTWHQTGLTSKILETI
KKLEYESPMPIQAQALPIIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPI
GLIMAPTRELVQQIHSDIKKFSKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI
DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQV
EILARKVLNKPVEIQVGGRSVVNKDITQLVEVRLENERFLRLLELLGEWYEKGKILIFVH
SQEKCDALFRDLIKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKE
LELVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQAVPD
DLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDS
DDDDDSIRKAGGDISQHTALAQIIAAASKVSTANTPMPTPVSAVQLLPNGGLPVTLPTIG
LAIPGTTAAVSATGLPVVANDGAGAARAAAIAAALNLQKNLLKLQEVAMPEHYEAELEIN
DFPQSARWRVTHKETLGPISEWTGAAITTRGQYFPQGRIPGPGDRKLYLFIEGPTEQSVK
RAKSELKRVLEDITNQGSQTNSAAQPGRYQVL
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggggaagcacaaatctaggagggaggattcggagaggagtgaggtggaggat
ttgaaggagtcgaagcggagccaccgtgatcgcgatagagaaagagataaggagagaaat
ggggagagacacagggatagggtgaagaaagaccgtgatagccggcgttctgagagagag
aagagtagcgaatctgatgacaaggagagaaatggggagagacatagggagcgggatagg
gagaagaaggaccgcgatagccggcgttctgagaaagagaagagtagtgaatctgatgag
aaggagagaaatggggagaggcatagggaccaggagagggagaagaaggaccgagatagt
cggcgttctgagagagagaagagtagtgattctgatggcaagcatgatagaattagggag
aagcatagagacagggacaaggataaggataggacaagaagtcgtgatgacgacagagaa
agagagagggccagagaaaagaagagggaaagagacagggaagagagggagagagagagg
gagagggaaagggagaaagagaagagggagagagcaagagagaaagaaagagagagggaa
agagaaagggagaagagggaacgtgacagagaagagcgagagagggagagagagagggaa
agggagaggagggagcgtgaaagagagagagagaaggagagagaaagagagaggaggata
cgggatagggagaagcatcgagaagccgatagtgatgacggtgatgataatcatagggag
catgacaggaagcgacgcaggagagacgatgatggttacaaggatagagatcgtgaacgg
agcaggagcaatagcaggcctcgcaagcacagggctgatagtgaagagagcccaagaaaa
aagagtactgaggatgattctgataaggataataaactgacccgtgaagaggagttgaaa
gatgagcagcggagattggaggaggaaatggaaaagcggaggaggagagtgcaggagtgg
caggagacaaagagaaaaaatgaagaagctgagagagaaaagcgtggggaagcaaatgct
gaggaacccatgtctgggaagacctggacccttgaaggagaatctgatgatgaagaagta
cctcctatggggaaaccagagacagatatggacattgatgaaaatgtcaatcctactgac
aatgaagttggggattcaatgttggttgattctgaggatggaatagcttccacttcacag
aatggggctgatggtgatgctggggatgaagaaattgatccattggatgcctttatgaat
tctatggtattgcctgaagttgagaagctaaacaatacttcagctcctccgaattttgat
gatatggatgtggactcaaagaacaaacctaagaaggatgaattaagtaatggtgagcag
cctaggaagggttcaaataagtctatggggagaataatgcagggtgaagattcagagtca
gattatagtgaccttgagaatgatgaggatcctgtacaagaagaagatgatgatgagttc
atgaaaagggtgaagaagacaaaagctgagaagctttctgtagttgaccactcaaagatt
gattatgaaccgttccggaaaaacttctatattgaagtgaaagagatcgctaagatgact
tctgaagaggttgttgcttaccgaaaagaattggaattgaagatacatggtaaagacgta
ccaaagccaattaaaacctggcaccaaacgggacttacgagtaaaatcttggagacaata
aagaagctggaatatgaaagtccaatgccaattcaagctcaggctctgcctataattatg
agtggtcgagactgcataggcgttgccaaaactggctcaggcaaaacccttgcatttgtg
ctgccaatgttgaggcatatcaaggaccagccacctgtggtagctggagatggacctatt
gggcttataatggcacctacaagggagcttgtacagcagatccacagtgatataaagaag
ttttccaaggtacttggtatcaggtgtgtgcctgtgtatggaggttctggtgttgctcaa
caaattagtgaattgaagcgtggtacagagattgttgtctgtactccgggtaggatgatt
gacatactttgcacaagtggggggaaaattacaaatctgcgtagagtcacatatttagtt
atggatgaagctgaccggatgtttgacatgggttttgagcctcaaattactcgaattgtt
caaaatattcggccagatcgccaaacggtactcttttctgcaactttccctcgtcaagta
gaaattttggcacgtaaagtgttaaacaaacctgtggagatacaggttggtgggagaagt
gttgtgaacaaggatataacacagttggttgaggtgaggctggaaaatgaaaggttctta
agattgctggaattacttggggaatggtatgagaaagggaagattttaatatttgtccac
tcgcaggagaaatgtgatgctttgttcagggatctcatcaagcatggttatccttgcctc
tcgcttcatggggctaaggaccagactgaccgtgaatccaccatttctgattttaagagc
aatgtctgcaatttgctaattgctacaagtattgctgctaggggtttagacgtgaaggag
cttgaattggtggtcaactttgacgttccaaaccactatgaagattatgtccatcgtgtt
ggtcgtacaggtcgagctggtcggaaaggttgtgctatcacatttatttctgaggaagat
gcaagatacgcacctgatcttgtaaaagcattggaactttctgagcaagctgttcccgat
gacctgaaagctcttgctgatggttttatggcaaaagtgaatcagggacttgagcaagcc
catggtactggttatggtggaagtggttttaaatttaatgaagaggaagatgaggtgagg
agagctgcaaagaaagcacaggccaaagaatatggttttgaagaggacaagtcagattcg
gatgacgatgatgacagtatacggaaggcaggtggtgacatatcccagcatactgcctta
gctcagataatcgctgctgcctccaaagtcagtacagcgaatacacctatgccgacccct
gtctctgctgtacaactgcttcccaacggtggactacctgttacactgccaacaattggt
ctagcaatacctggaacaacggcagcggtgtctgcaactggcctgcctgttgttgccaat
gatggagcaggggcagctcgggcagcagcaattgcagcggctctcaacttacagaaaaat
ttgttgaagcttcaagaagttgctatgccagaacattacgaagcggagttggagataaat
gattttccccagagtgctcgatggagggttacccacaaggaaactttgggcccaatttca
gagtggactggagctgctattactacgagggggcagtatttcccacaaggtcggatcccg
ggacccggagatcgcaagctctacttgttcattgagggccctactgaacagtctgtcaag
agagctaaatcagaattaaaacgagttttggaagacatcacaaaccagggatcacaaaca
aacagtgcagcccaacctggcagataccaagttttataa
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integrated database retrieval system
