Quercus suber (cork oak): 112030200
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Entry
112030200 CDS
T05868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112030200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112030200
03012 Translation factors [BR:
qsu03012
]
112030200
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112030200
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112030200
Translation factors [BR:
qsu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112030200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
HA2_N
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
112030200
NCBI-ProteinID:
XP_023918663
LinkDB
All DBs
Position
Unknown
AA seq
734 aa
AA seq
DB search
MIHIPGFTYPVRSYFLENILEMTGYRLTSYNQIDDYGQEKVWKMQKQAQTLKKRKSQIAS
AVEDAVEAADFKDYSLRTQDSLSCWNPDSIGFNLIEYVLCHIVKKERPGAVLVFMTGWDD
INSLKDQLQSHPLLGDPSKVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSIT
INDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCV
YDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKIIGA
LDENENLTLLGRNLSTLPVEPKLGKMLIFGAIFNCLDPIMTVVAGLSARDPFLMPFDKKD
LAESAKAQFAARNYSDHLALVRAYEGWKDAERKQSSYEYCWRNFLSAQTLKAIDSLRKQF
FFLLKDTGLVDQDPENCNRWSHDEHLIRAIICAGLFPGICSVVNKEKSIALKTMEDGQVL
LYSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNISRGGLDGHLKM
LGGYLEFFMKPALADTFISLRREVEELIQKKLLDPKHDMQLYNDKLLSTVRLLVSEDQCD
GRFVFGRHLPAPSKKATKDMLPGALSKGGVEGNNLKNHLQTLLARAGHEAPTYKTKELKN
NQFRSTVIFNGLNFVGKPCTSKKLAEKDAAGEALLWLSGESPSVPTDIDHMSMLLKKSKR
KDQRRTSIRGAKWG
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgattcatattcctgggtttacatacccagtccgctcatattttctggagaatattctg
gaaatgactggatatcgattgacttcatataatcaaattgatgattatggtcaagaaaag
gtgtggaaaatgcagaaacaagctcaaactctaaaaaagaggaagagccagattgcttct
gctgttgaggatgcagttgaagctgccgactttaaggattatagcctacggactcaggat
tctttatcctgttggaatcctgactcaattggttttaacctcattgaatatgttctctgc
cacatagtcaagaaggaaaggcctggtgctgttttggtttttatgactggttgggatgac
ataaattctttgaaggaccagctccaatctcatcccctcttgggcgacccaagcaaggtg
ctgcttcttgcatgtcatggttccatggccagctctgagcagagattaatatttgataag
cctgaagatggagtgaggaaaatagttctagctacaaacatggctgagactagtatcacc
atcaatgatgttgtttttgtggttgattgtggaaaggcaaaagagacatcatatgatgca
ctaaataataccccttgtttgctaccatcctggatatcaaaggctgctgctcggcaaagg
agaggaagagctggtcgggttcaacctggcgagtgttatcatctctatcctagatgtgta
tatgatgcttttgctgattatcaattgccagaacttttaaggacaccattacaatcgtta
tgtttacaaatcaaaagtttacaacttggaagtatttcagaattcttatctagggcattg
cagccaccagaacctctatcggttcaaaatgctgtagaatacttgaagatcattggggct
ttggatgagaatgaaaatctgactttgctaggacgcaacttgtcaacacttccagttgaa
ccaaaacttggaaagatgctcatatttggggctattttcaactgcttagatccaataatg
actgttgttgctggtcttagtgccagagatccattcttgatgccattcgacaagaaagat
cttgcagagtctgcaaaggcacagtttgctgcccgtaattacagtgaccaccttgccctt
gtccgagcttatgagggttggaaagatgctgaaagaaagcaatccagttatgagtactgt
tggagaaatttcctttctgctcaaacactgaaagccattgactctcttcggaagcagttc
ttctttttgctgaaggacacaggtctagttgatcaagacccagaaaactgcaatagatgg
agccatgacgagcatcttatccgagctatcatctgtgcaggcttgttccctggaatatgc
tctgttgtgaacaaagagaagtcaatagcactgaaaacaatggaggatggtcaagtactt
ctgtactcgaattctgtgaatgctggggtacccaaaattccatatccatggttagttttc
aatgaaaaggtgaaagtaaattctgtatttcttcgcgattcaactggtgtctccgattca
gtgcttctcttatttggagggaacatttccaggggtggactagatgggcacctaaaaatg
ttgggaggatacttggaatttttcatgaaacctgctttagcagatacgttcataagctta
aggagagaagttgaagaactaatacagaagaaactcttggatcccaagcatgatatgcaa
ttatacaatgacaagctcctttcaactgtaagattgctagtctcagaggaccaatgtgat
ggtagatttgtctttggtcggcacctgccagcaccctcaaagaaggcaacaaaagatatg
ctaccaggtgcactctcgaaaggtggagttgagggtaataatttgaagaatcacctacag
acattgcttgccagggcaggacatgaagcacccacatacaagacaaaagaactgaaaaat
aaccagttccgttccactgtgatctttaatgggttgaattttgtggggaaaccttgcacc
agtaagaaactcgcagagaaggacgctgctggtgaggctctactgtggttgagtggtgag
agcccttcagttcctacagatattgaccacatgtctatgcttctaaagaagagcaaaagg
aaagatcagagaagaacctcaattcgtggtgctaagtggggttaa
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