Quercus suber (cork oak): 112030440
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Entry
112030440 CDS
T05868
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112030440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112030440
Enzymes [BR:
qsu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112030440
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112030440
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112030440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
112030440
NCBI-ProteinID:
XP_065617862
LinkDB
All DBs
Position
Unknown
AA seq
404 aa
AA seq
DB search
MALEDEQDANTLQWEVSVTLSSNQPVIGSEIFTTETKLVNSYHTIGSLPPPPHSFVYTWY
RHSIPCSVHHHKLATVQCTSCDKLNASIEKSYHCSSKCFSDAWNKHKKYHHWAAHAARNN
STGNQQDVKKLRSSGSWPNLIDGSVLDENAIMVEEDNIWIKNTLNSNLKAQSSNDVVFSV
LTYNILADSLSINALGYCPKWALAWEYRQENLLEEIIKYDADILCLQEVQCDHFENFFEP
ELKILGYSVMYKKKTGAGLFTAESEKSTNHGCATFYHSKLFKEIMKYELEFDKEASSVVN
ALEPKIRFKGSHRLTSKDNVALVVVLESLQNGSNRDAFQSRICVANTHIHWSKGHEDVTL
FQVAHLVNGLEKIAQSQQIPLIICGDFNSRPGRYVFCYWQSGSH
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggctctcgaagatgagcaagacgccaacactttgcaatgggaagtgtcagtaacgttg
tcgtccaaccaacccgtcatcggctccgaaatctttaccactgaaaccaaacttgtcaat
tcatatcatacaattggctctctcccaccgccaccgcattctttcgtttacacctggtat
cgacatagcattccttgttctgtacaccatcataaattggctactgttcagtgcacctct
tgtgacaaattgaatgcatcaattgagaaaagctaccattgctcttcaaagtgcttctca
gatgcatggaataaacataagaaatatcatcattgggcagctcatgctgctagaaataat
tcaactggcaatcagcaagatgttaagaaactcaggagttctggctcttggccaaactta
attgatggctcagtacttgatgagaatgcaataatggtggaagaagataacatatggatt
aagaacactttgaactcgaaccttaaagcccaatcttctaatgatgtagtttttagtgtg
ctgacctataatatccttgctgattcgttgtcaattaatgctcttggttactgcccaaaa
tgggctcttgcatgggaataccgtcaagagaatttgctcgaagagatcattaaatatgat
gcagatatactttgtcttcaggaggtacagtgtgaccattttgaaaatttctttgagcct
gagctgaaaatacttggatactcagttatgtacaagaaaaaaactggagccgggcttttt
acggctgagtctgaaaaatcaacaaatcatgggtgtgcaacattttaccatagtaagctg
ttcaaagaaattatgaaatatgagcttgagtttgataaagaggcatcatcagtggttaac
gctttggagcctaaaatcagattcaaaggcagccatcgtcttacatcaaaggacaatgtt
gcactagttgttgtattagaatcactacaaaatggcagtaacagggatgcctttcaatct
agaatatgcgtggcaaacacccacatacattggagtaaaggtcatgaagatgtaacatta
tttcaggttgcgcaccttgtgaatggactcgagaaaattgcccagtcacaacaaattcct
ctaataatttgtggggatttcaactctcgtcccggaaggtatgtcttttgttactggcaa
agtggctcacactga
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