Quercus suber (cork oak): 112033331
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Entry
112033331 CDS
T05868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03013
Nucleocytoplasmic transport
qsu03015
mRNA surveillance pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112033331
09122 Translation
03013 Nucleocytoplasmic transport
112033331
03015 mRNA surveillance pathway
112033331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112033331
03041 Spliceosome [BR:
qsu03041
]
112033331
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112033331
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112033331
Spliceosome [BR:
qsu03041
]
Complex C
Other components
EJC/TREX
112033331
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112033331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
112033331
NCBI-ProteinID:
XP_023921884
LinkDB
All DBs
Position
Unknown
AA seq
269 aa
AA seq
DB search
MKIILADLGLFQRENTSRILALARDKDLRLKNVRHFILDECDKMLESLDMRRDVQEIFKM
TPHDKQVMMFSATLSKEIHPICKKFMQEPMEIYVDDEAKLTLHGLVQHYILLKEAEKNRK
LNDLLDALDFNQVVIFVKSVTRAAELNKLLTECNFPSICIHSGMAQEERLKRYKNFKEGQ
SRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS
DVLNQVQSRFEVDIKELPEQIDTSTYMPS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcatccttgccgatttgggcttgtttcagagagagaacaccagtcgaatattg
gctctggcaagggataaagatcttcgattgaagaatgtgaggcattttattcttgatgag
tgtgataagatgctagaatcactggacatgaggagagatgtgcaggagatcttcaagatg
actcctcatgacaagcaagttatgatgttttcagcaactctcagtaaagagatccaccct
atttgcaaaaaatttatgcaagagccaatggaaatttatgttgatgatgaggccaagttg
actcttcacggtcttgtacagcactacattttattgaaggaggcagagaaaaaccgcaaa
ttgaatgatcttcttgacgcattggacttcaatcaggttgtaatttttgtcaagagtgtg
accagagctgctgagctgaacaagttacttaccgagtgtaacttcccctctatctgtatc
cattcaggaatggcacaggaggagaggttgaaacgttataagaatttcaaggagggacaa
tcaagaattcttgtggcaacagatttggtaggaagggggattgatatagagcgtgttaac
atagtcatcaactatgatatgccagattctgctgatacatacctgcacagggtgggcagg
gctggtagatttgggactaaggggcttgcaattacatttgtctcatctgcatctgactcc
gatgttcttaatcaggttcagtcgaggttcgaggtggacataaaggagcttcctgagcaa
attgatacttcaacttacatgccatcatga
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integrated database retrieval system
