Quercus suber (cork oak): 112034134
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Entry
112034134 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulating factor 64
KO
K14407
cleavage stimulation factor subunit 2
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112034134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112034134
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112034134
U7-dependent histone pre-mRNA processing factors
112034134
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
DUF4763
RRM_7
Motif
Other DBs
NCBI-GeneID:
112034134
NCBI-ProteinID:
XP_065623194
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGSWGPGLASNVEPQKQLAGPAIHGE
SVHHQPIGLQIAITAAAVMAGTLGGAQAVMQSNPNGLHSQSALANDPLTLHLAKMSRIQL
NEIMFELKAMATQNKELARQLLVARPQLPKALFQAQIMLGMVTPQMLQMPNIRQASGQLT
QPPLHDRQQGQQSAAQTLPGLPXPAQNKMLSGLMPKVQESQVSVVSQNPLVHNQFSSAPQ
PRVQLPQHANNHIVQQATFPGHSAISTLPPIPPSSLGSLSSRPQIQMAKSSLXNHQTQPS
LPQHSGQVGAANLGHSIQMVNPNALKPSLLPRPPLSDAGFQPGPPISSGISQAINKGADN
GNWVHRSNAYVNAPSGSMVYDSLEPIDRPTKLMKLDDGRSNAFSVGSSNASNTNGSGLPQ
VFGAGSLPVNQVLKAEGQNSEKQLSQSPQSQLPPEVESALLQQVLNLTPEQLSSLPPEQQ
QQVIQLQQVLRRDQIQPS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttctcagcatcgctgcgtttttgttgggaacataccatatgatgccactgag
gaacagcttatagaaatctgccaggaggttggtcctgttgtgtctttcagattagtaatt
gatagagaaactgggaaaccaaaaggttatggattctgtgaatataaggatgaagagaca
gctctaagtgctcgtcgtaatcttcaaggttatgagatcaatggccggcaattacgggtt
gattttgctgaaaatgacaaaggtgctgaccgaaatcgagaacaagggtcgtggggacct
gggcttgcttctaatgttgaacctcaaaaacagttagctggcccagcaatccatggggaa
tctgttcaccatcagccaattggtctccagatagctataactgccgcagctgtcatggca
ggaactctaggtggtgctcaggcagtcatgcagtcaaatccaaatggtttgcacagtcag
tcagcactggccaatgatcctttaactcttcatctggctaaaatgtctaggattcaactc
aatgaaataatgtttgagctgaaggcaatggctacacaaaataaggaactggctcgccag
ctattggttgcaagaccacagttgcctaaagctctttttcaggcacagataatgctagga
atggtgacaccccaaatgttgcagatgccaaatattcggcaggcttcaggtcaactcacg
cagcctccattgcatgataggcagcagggtcagcaatcagcagctcaaactcttcctgga
ctacccnctcctgcccagaacaagatgctgtctgggttgatgcctaaagttcaagaaagt
caagtttctgtagtgtctcaaaatcctttggttcacaaccaattttcttcagcaccacaa
cctcgagttcaacttccacaacatgcaaacaatcatattgtacaacaggccacatttcct
ggacattctgcaatttcaacacttcctcccataccaccctcttctttgggaagtttgtcc
tctagaccacagatacagatggcaaaatcctctctcnttaaccatcaaacacagccctct
ttgccacaacactctgggcaggttggggctgccaatttagggcatagcattcagatggtt
aatccaaatgcactgaaaccttctctcttacctcgtcctcccttatcagatgctggcttt
cagcctggccccccgatatcatcaggtatatcacaggcaattaacaagggggctgataat
ggaaattgggtccacagaagtaatgcatatgtaaatgcaccttctgggagcatggtttat
gattctttagaaccaattgatcgccctacaaagctaatgaaattggatgatgggaggagc
aatgctttctcagtggggagttcaaatgcatccaacaccaatggatctggactgccccaa
gtttttggagctggctcattgcctgtgaatcaagttctgaaagcagaagggcaaaattca
gagaaacaactttcccagtcacctcagtcacagcttccacctgaggtggagtctgcctta
ctgcaacaagtgttaaacctcacaccagagcaattaagttcattgcctccagagcagcaa
caacaagtcattcagctccaacaggttcttcggcgagatcaaattcagccatcttag
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