Quercus suber (cork oak): 112035689
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Entry
112035689 CDS
T05868
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112035689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112035689
03041 Spliceosome [BR:
qsu03041
]
112035689
03036 Chromosome and associated proteins [BR:
qsu03036
]
112035689
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112035689
Spliceosome [BR:
qsu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112035689
Complex B
112035689
Complex C
U2 SnRNP specific factors
112035689
Chromosome and associated proteins [BR:
qsu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112035689
TFTC complex
112035689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
112035689
NCBI-ProteinID:
XP_023924287
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGSFSGGKSQEIVVARGKLLELLRPDDNGKIQTLLSVETFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
GIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGVAAGDAQKNLTFYELDLGLNHVSRKWTEAVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDLRAVIPRRADLPAERGVLIVSAATHKQKAMFFFLLQ
TEYGDIFKVTLDHDNDHVTELKIKYFDTIPVTSSMCVLKSGHLFAASEFGNHAFYQFQGI
GDDADVESSSASLMETEEGFQPVFFQPRRLKNLLRIDQVESLCPIMDMKVVNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNVTDEFDAYIVVSFSNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRAPGKR
TIAKVGSNRLQVVIALSGGELVYFEVDITGQLIEVDKHEMNGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILTLDPDEGMQDLSVQSVSSAPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGKRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFASDQCAEGVVAVAGDALRVFTIERLGETFNETVIPLRYTP
RKFVLQPKRKLLVIIESDQKAFSAEEREAAKKECFEASGTGENGNGNAEKMENGGDDEDK
DDPLSDENYGYPNAESERWVSCIRVLDPKTASTTCLLELQENEAAFSICTVNFHDKEYGT
LLAVGTAKGLQFWPKKSSTAGFIHIYRFLEDGRSLELLHKTQVEGVPTALCQFQGRLLAG
IGPVLRLYDLGKRRLLRKCENKLFPNTIVSIHTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDSVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSLGALLAFTSRDDVDFFS
HLEMHLRQDNPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPG
EILKKLEEVRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctcactctccaacgagccaccggcatagtctgcgctatcaacggc
agcttctccggcggcaagtctcaagagatcgtggtcgcgcgcggcaaactcctcgagctt
cttcgacccgacgataacggtaaaatccaaacccttctctccgtcgaaactttcggtgcc
attaggtctttagctcagtttaggctcactgggtctcagaaagactatattgttgttggt
tccgactcgggtcggattgtgatacttgaatacaataaggaaaagaatgtgttcgataaa
attcaccaagaaacttttgggaaatctgggtgtcgtagaatagttccgggtcagtacttg
ggtatcgatccgaaaggtagggctgtgatgattggggcttgtgagaagcagaagctcgtt
tatgtgttgaatagggatacagcggctaggcttaccatttcgtctcctttggaggcgcat
aaatcgcatactatagtgtattcgatttgtggggtggattgtgggttcgataatcccata
tttgctgccattgagttggattactcggaggcggaccaggattcgactggggtggcagca
ggtgatgctcagaagaatttgactttttatgagcttgatttagggcttaaccatgtgtct
aggaagtggactgaggctgttgataatggtgcaaatatgcttgttactgttcctggaggt
ggggatgggcctagtggcgtgctggtttgtgcggaaaattttgtgatatataagaatcag
ggacacccggatcttagggctgtgattcctaggcgtgcagatttgcctgccgagcgtggg
gttcttattgtttcagcagctacgcataagcagaaagcgatgttcttctttctgttgcaa
acggagtatggggatatttttaaggttactttggaccatgacaatgaccatgttacggaa
ttgaagattaaatattttgatacaattccagttacttcttccatgtgtgtgttgaagtcg
ggtcacttatttgctgcttcagaatttgggaatcatgctttttatcagttccaggggata
ggtgatgatgccgatgtggagtcttcgtcggcttcgttgatggaaactgaagaaggtttt
cagccagtgtttttccagcccagacgacttaagaaccttcttaggattgaccaagttgag
agcttgtgtccaataatggacatgaaagttgtaaatctctttgaagaagaaacgcctcag
atttttacactttgtgggcggggtcctcgttcatccctcagaatattaagacctggtttg
gctattagtgaaatggctgtgtcagagcttcctggtgtaccaagtgcagtttggactgtt
aaaaagaatgtcactgatgagtttgatgcatacattgttgtgtcattctcaaatgcaact
cttgttctttccattggtgagacagttgaagaagttagtgatagtgggtttcttgatact
accccttcacttgctgtttctttgataggtgatgactctctcatgcaagttcatcccaat
ggcataaggcatattagggaggatggacgtatcaatgagtggagggctcctggaaagagg
acaattgccaaggttggctctaacagacttcaagtagtcattgcacttagtgggggtgaa
ctggtgtattttgaggtggatatcactggtcaattgattgaggtggataagcatgaaatg
aatggtgatgtggcttgtttggacattgcccctgttcctgaaggaaggcagagatcccgg
ttccttgcagttggttcatatgacaacacgattcgtatattaacattggaccctgacgaa
ggtatgcaggatctcagtgtacaaagtgtttcttcagctccagaatctcttctttttctt
gaagtccaggcatcagtaggtggggaagatggtgctgatcatcctgcgagcctctttctt
aatgctggtctacagaatggggttttgttcagaacagttgtagatatggtgaccggtcag
ctttctgattcccgttctcgattcttgggactgagagccccaaagctcttttctattatt
gtaagaggcaagcgtgcaatgctttgcttatcaagtcgaccttggcttggttatattcac
caaggacattttcttttaacacccctgtcatatgagactcttgaatatgcagcatcattt
gcctctgaccaatgtgcagaaggtgtggttgctgttgctggtgatgctttgagggttttc
actattgagagactgggtgaaacatttaatgaaactgtgattcccctaaggtacacccca
agaaagtttgtccttcaacccaagcgaaaattgttggtaattattgagagtgatcaaaaa
gcattctcggctgaagagcgcgaagctgcaaaaaaggagtgctttgaggcttctggaaca
ggtgaaaatggaaatggtaatgcagagaagatggagaatggcggtgatgatgaagacaaa
gatgatcccctctcagatgagaactatggctatcccaatgcagagtcagaaaggtgggtt
tcttgcatcagagttcttgacccaaagacagcaagtacaacttgtctgcttgagcttcag
gagaatgaagctgctttcagcatatgcactgtgaatttccatgataaggagtatggaact
cttttagctgttggcacagcaaaaggactacagttttggcccaaaaaaagttcaactgct
ggttttattcatatttataggtttttagaggatggaagatcccttgaacttttgcacaag
acacaagttgaaggtgttcctactgctttgtgccagtttcagggaagattactggctggt
atagggcctgtgctcagattatatgatttgggcaagaggagattgcttagaaaatgtgag
aacaagctgttccccaacactattgtctctattcacacttaccgtgatcggatatatgtt
ggtgacattcaagagtcattccattactgcaagtacagacgggatgagaatcaactgtat
atatttgctgatgatagtgttccaagatggttgactgcatcataccacatagactttgac
accatggcaggggcagacaagtttgggaatgtctattttgtgcgattaccacaggatgtt
tcagatgagatagaagaagatccaaccggtgggaagataaaatgggagcaggggaagttg
aatggagctccgaacaaggtagaggagatagtgcagtttcatgtcggtgatgttgtcacc
tgcttgcagaaggcatctctaattcctggaggtggagagtgcctcatatatggcacagtg
atggggagcttgggggcattgctagcattcacatcccgtgatgatgttgacttcttttct
cacttggagatgcatctgaggcaggataatcctccattgtgtggaagagatcacatggct
tatagatctgcatattttccggttaaggatgtgatcgatggggatctatgtgagcagttc
cctacactgcctctggatttgcagagaaaaattgcggatgaattagacagaactccagga
gagatactgaagaaacttgaagaagttcgaaataagatcatttga
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integrated database retrieval system
