KEGG   Quercus suber (cork oak): 112037413
Entry
112037413         CDS       T05868                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    112037413
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:qsu04121]
    112037413
   03036 Chromosome and associated proteins [BR:qsu03036]
    112037413
Ubiquitin system [BR:qsu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     112037413
Chromosome and associated proteins [BR:qsu03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     112037413
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 WD40_WDHD1_1st Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 MIOS_WD40 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_Vps41
Other DBs
NCBI-GeneID: 112037413
NCBI-ProteinID: XP_023925996
LinkDB
Position
Unknown
AA seq 347 aa
MENSTQESQHQQNSITHEAPYPLYSLAISPSPTRSHHYRIAVGSFIETYNNRVDILSFDP
ETLSLKPLHPSLSFDHPYPPTKLMFHPTSTTSSSSPSNPNPNPNLLASSGDFIRLWDLRD
HSIEPLCVLNNSKTSEFCAPLTSFDWNEVEPKRIGTCSIDTTCTVWDIERCVVETQLIAH
DKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRY
MATILMDSNKVVILDIRSPTMPVAELERHKGSVNAISWAPQSPRHICSAGDDTQALIWEL
PTVAGPNGIDPMSVYSAGSEINQLQWSAAVPDWIAIAFSNKMQLLKV
NT seq 1044 nt   +upstreamnt  +downstreamnt
atggagaattcaactcaagaatcccaacaccaacaaaactcgataacccatgaggcccca
tacccactctactccctagcgatctctccgtcgccaactcggtcccaccactaccgcatc
gccgtcggcagcttcatcgagacctacaacaaccgggtcgacatcctcagcttcgacccg
gagactctctctctcaagccgctccacccttctctctcctttgaccacccgtacccgccg
acgaagctcatgttccacccgacctccaccacgtcgtcgtcttctccctcgaaccctaac
cctaaccctaacctcctcgcctcctccggcgacttcatccgcctctgggacctccgcgac
cactcgatcgagcccctctgcgtgctgaacaacagcaagacctccgagttctgcgctccg
ctcacttcgttcgattggaacgaggtcgagccgaagcgaatcgggacgtgtagcatcgac
acgacgtgtacggtctgggacatcgagcgctgcgtcgtcgagactcagctgattgcgcac
gacaaggaggtttacgacattgcgtggggggaggctagggttttcgcttcggtttcggcc
gacggctcggtgaggattttcgatctgagagataaggagcactcgacgatcatctacgag
agtcctcagcccgatacgccgctgctgagattggcgtggaacaagcaggacttgaggtac
atggcgacgattctgatggatagcaacaaggttgtgattttggatatccggtcgccgacg
atgccggtggcggagctggagagacataagggtagtgtgaatgcgatttcctgggcgcct
cagagtcccaggcatatttgttcggctggggatgatactcaggctttgatttgggagctt
cccactgtggcgggacccaatgggattgatccaatgtcggtgtactctgccgggtcggag
attaatcagctgcagtggtctgccgccgtgcctgattggattgccatcgcgttttcgaac
aaaatgcagctcttgaaagtttga

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