Quercus suber (cork oak): 112037429
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Entry
112037429 CDS
T05868
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112037429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112037429
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112037429
mRNA degradation factors
5'-3' decay
Decapping complex
112037429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
112037429
NCBI-ProteinID:
XP_023926010
LinkDB
All DBs
Position
Unknown
AA seq
1369 aa
AA seq
DB search
MASPVNPNLQNQNQNQQGTQFDLQKLFKPTSNPGHLNTSPSFPTPTSSPSSSSPPYLLPS
SSYPPPTGPSYPFHHPHFLPYPPPPTPLDHFVHQFPQPNLHAPLRPISPTATTSTTTTTT
TTTSATDFSMTHLPITPSAPPTRLLSTKLPRGRHLIGDKLVYDIDVRLEDEAQPQLEVTP
ITKYASDPGLVLGRQIAVNRSYICYGLKMGNIRVLNINTALRSLLRGHSQRVTDMAFFAE
DVHLLASASVDGRIFIWKINEGSDEDDKPQITGKIVLSIQIEGAGESVHPRVCWHPHKQE
ILMVAIGNRVLKIDTTKVGKGVVFSAEEPLKCLIDKLIDGVQSVGKHDGEVTELSMCQWM
TSRLASASMDGTVKIWEDRKASPLTVLKPHDGNPVNSVTFLTAPHRPDHIALVTAGPLNR
EVKIWASMSEEGWLLPSDTESWRCTQTLDVKSSSERKVEEAFFNQVIALPRAGLFLLANA
KKNAIYAVHIEYGPNPASTRMDYIAEFTVTMPILSLTGTSDSLPDGEHIVQVYCVQTQAI
QQYALDLSQCLPPPLDNVGLEKSDSNVSRAFDASDGSATFESPPGTKPTEIPEVNATTVA
PILSSSSENAPEASRPEKLASSEVTNLPEVAISGMETVASDLPSHSSAENIHAALPPLPL
SPGLSREFRGFRSPSNSSETSPPLTDYGGDQSPLEYTSDRRMDTGKDSMTNVPPSVDNLS
KGDKNAVHSDVSNVPSPPIVFKQPTHLVTPSELLSTAPSSSENSQINLGVNVVEAKVQDV
VVSNDAESTEVEVKVIGETGTSQNNEFDSQRDSHIMVAQKKEKSFYSQASDLGIQMARDC
CVGNYGVEKFRQANDVSITEAPNHPPNPCADEAQDMMKDIPAKVGESETPMGVLQSPAPV
LKGKRQKGKNSQVSGASSPSPSPFNSTDSFNEPSGDSGSPSLETALPQLLAMQEMLEQLM
STQKEMQKQMNVIVSGSVTKEGKRLEGSLGRSMEKVVKANTEALWARFQEENAKQEKLEQ
DRMQQITNLITNYMNKDLPAMLEKTLKKEIALVGPTVARAITPIVDKTMSSAIMESFQKG
VNQLERSVSSKLEGSMTRQIQAQFQTSGKQALQDALRSSLEASIIPAFEMSCKTLFEQVD
TTFQKGLVKHTSATQQQFESAHSPLAVALRDAITSASAITQTLSGELADGQRKLLAIAAA
GANPKAVNPLVTQLSNGPLAGLHEMAEAPVDPTKELSRLMAECKFEEAFTGALQRSDVSI
VSWLCSQVDLQRILSTMPLPLSQGVLLALLQQLACDISNETSRKLAWMTDVAVAINPADP
MIAVHVRPIFEQVYQLLGHHRNLPTTSASEANSLRLLMHVINSVLMSCK
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctgtaaatcccaatctccaaaaccaaaatcaaaatcaacaaggaacacaa
tttgatttgcaaaaactcttcaaacccacatcaaatcctggtcatctaaacacctctcca
tctttcccaacccccacttcttctccatcctcttcatcacctccatatctcttaccttct
tcttcttatcctccaccaactggtccttcataccctttccaccaccctcactttcttcca
taccctcctccgccaacacccctcgaccattttgtccaccagttccctcaacctaacctc
catgcccctctcagacccatctccccaactgcaacaactagtactactactacaacaaca
acaacaactagtgccactgatttctcaatgacccatttgcccattacgccttccgcgcct
cccacaaggctgctcagcacaaaactcccaaggggtcgccatttaataggtgataaactt
gtctatgacattgatgttcgcttggaagacgaggctcagccacagctcgaagtcactcct
atcactaagtatgcctctgatcctggccttgtgcttggccgtcagattgctgttaataga
tcttatatttgctatggcctcaagatgggtaatatccgtgtccttaacattaacactgcc
ttaagatctttgctccgaggccacagccagagagtaactgatatggctttcttcgctgaa
gatgttcaccttttggctagtgctagcgttgatggacggattttcatttggaagatcaat
gaaggctcagatgaggacgacaaacctcaaatcacaggaaaaattgttctttctattcag
atagagggagcaggggagtcagtccacccacgagtgtgttggcatcctcacaaacaagaa
attttgatggttgcaattggaaaccgtgtccttaaaatcgacaccacaaaagttggaaag
ggtgtagtgttttcagcagaggaacctcttaagtgtctcattgataaactaattgacggg
gtccaatctgttggtaaacatgatggtgaggtaactgagttgtcaatgtgccaatggatg
accagccgtttagcttcagcatcaatggatggcacggtgaagatttgggaggaccgtaag
gcatcgccacttacagtattgaaaccacatgatggcaatcctgttaattctgtgacattt
ttgactgcccctcaccgtccagaccacattgctcttgttacagcggggccactcaatcgg
gaagtgaagatatgggcctctatgagtgaggagggctggttgttgcctagtgatactgaa
tcatggcggtgtactcagactttggatgtaaagagttcctctgaacgtaaggttgaggaa
gcattctttaatcaagtcatagcattgcctcgtgcaggcttatttctacttgcaaatgcg
aagaaaaatgctatatatgccgtacatatagagtatgggcctaatccagcttcaacccgc
atggattacattgctgagtttacagtcacaatgcctattctgtctcttactggaactagt
gacagtttaccagatggagaacatattgtacaggtctactgcgtccaaacacaagccatt
cagcagtatgcattggacttatctcagtgcctgccaccacccctggacaatgtggggttg
gagaaatcagactccaatgtttctcgagcttttgatgcttctgatggttctgcaactttt
gaatcacctcctggaactaaacccactgagatacccgaggttaatgcaaccaccgtagca
cctattctttcaagcagctctgaaaatgccccagaagcaagccgtcctgaaaagttagct
tcttctgaggttactaacttgccagaagttgctatttctggcatggaaacagttgcaagt
gatttgccttctcatagtagtgccgaaaatatccatgctgcattgccacctcttcctttg
agtccaggtttatctcgtgaatttcgtggttttagaagtccatcaaatagctctgagact
agtccacctcttactgattatgggggtgatcaatcacctcttgaatatacgtctgatcgg
agaatggacactgggaaagatagcatgactaatgtgcctccctcggttgacaatttgagt
aagggtgataaaaatgctgtacacagtgacgtttctaatgttcccagtcctcctatagta
tttaaacaaccaacacatctggtaactccatcagagttgttatctacagctccatcatca
tcagagaattctcaaattaatcttggtgtgaatgtggtagaggcaaaagttcaagatgtg
gttgtcagcaatgatgcagaaagcactgaagtagaggttaaagttattggtgagacagga
actagtcaaaataatgagtttgacagtcagagagattctcacattatggttgctcagaaa
aaggagaaatccttctattcccaggcatccgatcttggcattcagatggccagagattgt
tgtgtgggaaattatggtgtggagaaatttcggcaagctaatgatgttagtattactgaa
gcaccaaaccatcctcctaacccttgtgcggatgaagctcaagatatgatgaaagatata
cctgcaaaggttggcgaatcagaaactcctatgggagttttgcagtctccagccccagtg
ctgaagggaaaaagacagaaggggaaaaattctcaagtgtctggtgcatcttctccttct
ccaagtccttttaactctacagattcattcaatgaaccaagtggtgattcaggttcccca
tctttagaaactgctttgccccagttactggctatgcaggagatgcttgaacagttaatg
agcacgcaaaaagaaatgcagaagcagatgaatgtgattgtttctggctcagttaccaaa
gaaggtaaaagactagagggatccttgggccggagcatggaaaaagttgtcaaggctaac
actgaagctttgtgggctcgtttccaagaagaaaatgcaaagcaggagaagctagaacaa
gaccgtatgcagcagataacaaatttaatcacaaattatatgaacaaggacttgccagcc
atgctcgagaaaactttaaagaaggaaatagctttggttggaccgactgtagctcgtgca
attactccaattgtggataaaacaatgtcatcagctattatggagtcattccagaaaggt
gtgaaccaacttgaaagatcagttagttcaaaacttgaaggtagcatgactaggcaaatt
caagcacaatttcaaacttctgggaagcaagctcttcaggatgcactgaggtctagtctg
gaagcttcaataatccctgcatttgagatgtcatgcaaaactctgtttgagcaagttgat
accacattccagaaagggcttgtcaaacatacatctgctactcagcagcagtttgagtcc
gcacattctccattagccgttgctttaagggatgcaattacttcagcatcagcaatcact
caaaccttgagcggagagttggctgatggccagcgaaagctgttagccattgcagccgca
ggtgctaacccaaaagcagtaaatcccttggtaacacagttgagcaatggacctttggct
ggtcttcatgagatggctgaggcacctgtggatccaactaaagaactatctagattgatg
gctgagtgcaaatttgaggaagcatttactggagccctgcagagaagtgacgtctcaata
gtttcatggttatgttctcaggttgatttacaaagaattttgtcgacaatgccactccct
ctaagccaaggagttctgctggctcttctccagcaacttgcttgtgatattagcaatgaa
acatctagaaaattggcatggatgacggatgtagctgttgccataaacccagcagatccg
atgattgcagtgcacgttcgtcctatctttgagcaggtatatcagttactgggtcatcat
cggaacctaccaacaacctctgcttctgaagcaaacagcctccgccttcttatgcatgtt
attaattctgtgttaatgagctgtaaatga
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integrated database retrieval system
