Quercus suber (cork oak): 112038199
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Entry
112038199 CDS
T05868
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112038199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112038199
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112038199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML
WDR55
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_WDR75_1st
eIF2A
NBCH_WD40
WD40_RFWD3
Tricorn_2nd
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_DCAF12
WD40_like
WD_LRWD1
WDR54
Motif
Other DBs
NCBI-GeneID:
112038199
NCBI-ProteinID:
XP_065629963
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MWQRDSRDRTALQPTPAAAIDMLPTVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTPT
GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQN
NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGWDVKS
VDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNMVLCVKWNENGNWVLTASKDQI
IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQVEIPN
AHDNAVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFSMGQAQGYGEQNPVIGG
RMTGNFPVPEGPATPGPFPPGLTRNEGTIPGVGVAMPLQIPLDASAQGEQKQPLPLSMPL
GAPPLPPGPHPSLLASNQQQAYQQNPQIQQQHHHQQHQPLPQQMAPLPMPPPNMGQLQPP
SHLPLLPHPHLPRPPPQMSPLGMPSSIPSSMPGSMSMPSSGPASHPLSMPPVGMQGTMNQ
IVPPLPQGHFMGMNPMHSGPLSTSGVPPVGGFPNGLPNMQAPSNASGPQMYPQGGTFNRP
QAGQMSMMQGYNPYQSGNQAGLHPPPPPGPPPHGQAPQ
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtggcagcgagattcaagggacaggacagcattgcaacctaccccagctgcagcgatt
gatatgttgccaacagttgcatattcagataatccatctacaagctttgccgcaaaattt
gtacatacatctttgaacaaaaaccgttgttcgattaatcgggttttgtggactcctaca
ggtaggcgactaatcacaggctctcaaagtggagaattcactctctggaatggacagtca
tttaattttgaaatgattcttcaggcccatgatcaagcaatcaggtcaatggtatggagt
cataatgacaactggatggtttctggtgatgatgggggcgcaataaagtattggcagaac
aacatgaataacgttaaggctaataaatctgctcataaagaatctgtccgggacttaagc
ttttgtaggacagacctgaagttttgctcctgctcagatgatacaactgttaaagtttgg
gattttgcgcggtgccaagaagagcgttcattgtccggccatggttgggatgtgaagagc
gttgactggcaccctacaaaatctctgctagtttcaggtggtaaagacaaccttgtgaaa
ctctgggatgcgaaatcgggaagagagctttgttcgttccatggccacaaaaacatggtt
ctttgtgtcaaatggaatgaaaatggaaactgggtgctaactgcttcaaaggatcaaatc
attaagctctatgacattagggctatgaaggagcttgaatctttccgtgggcataggaaa
gatgtgactgctttggcttggcacccattccacgaggaatactttgttagtgggagtttt
gacgggtccattttccattggcttgttgggcatgaaactccccaggtagaaattcccaat
gcacatgataatgctgtgtgggaccttgcatggcatcctattggatatcttctctgcagt
ggtagcaatgatcacacaacaaagttctggtgcagaaataggccaggagacactgctcgt
gataaatttagcatgggtcaggcccaaggttatggtgagcaaaaccctgttattggtggt
cgcatgactggtaatttcccagtacctgaagggccagcgactccaggaccatttcctcct
gggttgactcgaaatgaaggaaccattcctggtgttggagttgcgatgccattacaaatt
cctcttgatgcatcagctcagggagagcaaaagcagcctcttccactttcaatgccatta
ggggctcctcctctccctcctggtccacatccctctcttcttgcttccaatcaacagcaa
gcatatcaacaaaatccacagatccagcaacaacaccaccaccaacaacaccagccactc
ccacaacaaatggctcctttgcctatgccccctccaaatatgggacagctacagcctcca
tctcatttaccgttgcttccgcatccccatttacctcgcccaccaccccaaatgtcccca
cttggtatgccttcatcaatcccatcttcaatgccaggatcgatgtccatgccttcatca
ggacctgcctcacatccattgtcaatgcctccagtgggtatgcaaggtacaatgaatcag
attgttcctccattaccacagggccatttcatgggcatgaaccctatgcactccggaccc
ttgtctacaagtggagtacctccggttggaggctttccgaatggcttgccaaatatgcag
gcaccatcaaatgcaagtgggccccaaatgtatcctcaaggtgggacatttaaccggcca
caagctggacaaatgtcaatgatgcaagggtataatccctaccagtctgggaatcaagct
ggtctgcatccacctccaccaccaggtccgccacctcatggccaagcgcctcagtag
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