Quercus suber (cork oak): 112038520
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Entry
112038520 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC112038520
KO
K26109
nuclear exosome regulator NRDE2
Organism
qsu
Quercus suber (cork oak)
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112038520
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112038520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
DUF2226
Suf
SDA1_HEAT
Motif
Other DBs
NCBI-GeneID:
112038520
NCBI-ProteinID:
XP_065633127
LinkDB
All DBs
Position
Unknown
AA seq
1152 aa
AA seq
DB search
MGEEKGLAESEEPKPSLFPLFPASDASQSQSQQLVTPTPPCQWLSNSSFTADLSVINDAV
SIQPQLEEEEEEEEEPEEKQPKSKEYEFLESDQDDNKKNSKNKKKKKKKKKKRKRSKERA
DGARKSGVRAWAGSDSNSNSNTKDYYFESRGDPDNLAFGSLYRMDIARYKPHNPLKLSGL
SYQGLYWWNRTGAMLDRDGDLDALDSKLVSAGRYWSAKYTALERHKSLKRVRLLAPIKTT
ADDFIPLSDIHTSHEGVDSGSVSRASIIEESWEDEVLRRTRDFNKLTRENPHDEKVWLAF
AEFQDRVAGMQPQKGARLQTLEKKISILEKAAELNPENEDLLLCLLKAYQNRDNIDVLIS
RWEKILMQHPGSYKLWREFLHVVQGDFSRFKVSDMRKMYAHAIQALSAASSKHFRQVHQS
AKPSDTAIVQLELGLVDIFLSLCRFEWQAGYQELATALFQAEIEFSLFCPLLLTEQSRRR
LFEHFWNSDGARVGEEDALGWSTWLEREEENRQKVIKDEESTRDNEKGGWTGWSEPLFKD
QDGSRNSINAANNNLDVGELQEEFEDEDVKEEDETEALLKKLGIDVEAEASCEVKETSTW
ARWSEEESSRDCDQWMPLRRKSGFHGDGTPDREGDEQLLRVILYEDVNEYLFSLSSVEAR
LSLMSQFIDFFGGKISQCICTNNSSWIEKVLSLEALPDAILSTLRRVHDALTKAQSSLSS
FSLEELLGSTNDISKRTDMMKFLRNATLLCLTAFPRNYILEEAALVAEELSATKMNSSRS
SDTPCRVLAKRLLKSDRQDVLLCGVYARREAAYGNIDHARRVFDMALSLIEGLPMELRSN
APLLYFWYAEAELANNPADSGETSFRALHILSCLGSGETYSPFKSQPSSLKLLRAHQGFK
ERIRTVRSAWVRGLIDDQSVALICSAALFEELTSGWAAGIEVLDQAFATVLPERQSHSYQ
LEYLFNYYVKMLQRHHKQLSLSKVWESVXSGLQIYPFSPELFGALLEIGHLYTTPNKLRW
MFDDFCHKKPSVIVWIFALLFEMSRGSSQHRIHGLFERALANEILHNSVVLWRCYVAYEI
NIACNPSAARRIFFRAIHACPWSKSLWLDGFLKLNSILTGKELSDLQEVMRDKELNLRTD
IYEILLQDDLIP
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggagaagggtttagcagaatcagaagaaccaaaaccctctctatttcctcta
tttcctgcttcggacgcctctcaatcccagtctcagcaactcgtcactccaaccccccca
tgtcaatggctctcaaactccagcttcaccgccgacctctccgtcatcaacgacgccgtt
tccatccaaccacaattagaagaagaagaagaagaagaagaagaaccagaagagaagcaa
cctaaatcaaaggagtatgagtttcttgaatccgaccaagacgataacaaaaagaattct
aagaataagaagaagaagaagaagaagaagaagaaacggaaacggtccaaagagagagca
gacggtgccagaaagtccggtgttcgagcttgggctggttccgattccaattccaattcc
aataccaaagattattacttcgaatcgcgtggcgatcccgataatttggctttcggctcc
ctttacaggatggatattgcccgctacaaacctcataaccctttgaagctatccggcctt
tcttatcaaggtttgtactggtggaaccggacaggtgcaatgttggacagagatggtgat
cttgatgcattggatagtaaactagtatctgctggtcgttattggtctgcaaagtacaca
gctttggagcgccataagagcttaaagcgtgtacgtcttcttgcacccataaagacgaca
gcagatgatttcattcctttatcagacattcatacctcccatgaaggtgtggatagtggt
tctgtctcgagagcttcaataattgaagaatcttgggaagatgaagttctacgcagaaca
cgggacttcaacaaattgacaagggagaacccacatgatgaaaaggtctggttagctttt
gcagagttccaggacagggttgcgggtatgcaaccccagaaaggtgctcgcttgcagaca
cttgaaaagaagataagcatactggagaaggcagctgagcttaacccagaaaatgaagat
ttgttgctttgtcttctgaaggcttatcagaacagagataacatcgatgtcttgattagt
agatgggaaaagatactcatgcagcatccagggagttacaaattgtggagggagttcctg
catgttgttcaaggagatttctccaggttcaaggtttcagacatgagaaaaatgtatgca
catgcaatccaggctctatctgctgcatccagcaagcactttaggcaggttcatcaatct
gcaaagccatcagatactgcaattgttcagctggaacttggtcttgttgatatattcctc
agtctatgcaggttcgagtggcaggctggctaccaggagttggctactgcattgttccag
gctgaaattgaatttagtttgttttgtcctttactcctgactgagcagagtagaaggaga
ctttttgagcacttttggaatagtgacggtgcaagagttggagaagaagatgcccttggt
tggtccacatggttggagagagaggaggagaataggcaaaaggttatcaaagacgaggag
agcacacgtgataatgaaaaaggtggctggacaggttggtcagagccacttttcaaagat
caggatggtagtagaaattcaataaacgcagccaacaataacttggatgttggggagctt
caggaggaatttgaggatgaagatgtcaaggaggaagatgaaactgaagctttgctgaaa
aaattaggtattgatgttgaagctgaggctagttgtgaggttaaagaaacttcaacttgg
gctagatggtcagaagaagagtcatctagggactgtgatcaatggatgcctcttcgcagg
aaatctggtttccatggtgatgggacacctgatagagaaggtgatgagcaacttttgagg
gttatattgtatgaagatgtcaatgaatacctgttttcattaagctcagtagaggcccgt
ttatctctcatgtcccaattcattgatttctttggtgggaaaatatctcaatgcatttgc
acaaacaattctagttggattgagaaagtccttagcttggaggcattgccagatgcgata
ttaagtactttgagaagggttcatgatgctttaaccaaggctcaaagcagtttgagtagt
ttcagtttggaagagcttttgggcagcaccaatgatatttctaagagaactgacatgatg
aaatttctccgtaatgcgaccttactttgtttaactgcttttccacgtaattacatcttg
gaagaagctgctttagttgctgaagagctatctgccacgaaaatgaactcttcccgcagt
tcagataccccatgccgagttcttgcgaagcgtctgctaaaaagtgatcgacaggatgta
ttactatgtggggtatatgcacgaagggaggctgcttatgggaatattgatcatgcgaga
agagtgtttgacatggcactgtcattaattgaagggcttccaatggaactacggtctaat
gcgcctcttctatatttttggtatgctgaggcagagcttgccaataatcctgccgacagt
ggtgaaacatcatttcgtgcactgcatatattatcatgcttaggaagtggtgaaacatat
agtccatttaaaagtcaaccgtcaagtttgaaactgctgagagcgcaccaagggttcaaa
gaaagaataagaacagtaagatcagcatgggtacgtggtcttatagatgatcaatctgtt
gctctcatatgttcagcagctttatttgaggagttgacatctggatgggctgcgggtatt
gaagttttggatcaggcttttgcaacagtgcttccagaaagacaaagtcatagttatcaa
cttgagtatttgttcaactattatgtgaagatgcttcagagacatcataagcaattgagc
ctatcaaaagtctgggagtctgttnattcggggctgcaaatatatcctttcagcccagaa
ctttttggagctttattggagattggccatctttacacaactcctaataaattgcggtgg
atgtttgatgacttctgtcacaagaaaccatctgtgattgtctggatttttgctctgttg
ttcgagatgagtagaggaagttcccagcataggatccatggattatttgaaagggcgttg
gcaaatgagattttgcacaactcagttgtactctggcgttgctatgttgcatatgagatt
aacatagcctgcaacccttctgcagccagacgaattttcttccgagctatccatgcctgc
ccatggtctaaaagtctttggcttgatggttttctcaagctgaacagtatcctaactgga
aaagagctgtcagatctccaagaagtcatgcgggataaagaattgaatctgaggacagac
atttacgagatccttttgcaagatgacctcataccatga
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