Quercus suber (cork oak): 112039752
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Entry
112039752 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112039752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
112039752
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112039752
Spliceosome [BR:
qsu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112039752
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_19
AAA_22
AAA_30
nSTAND3
PWI
PhoH
ABC_tran
SRP54
Motif
Other DBs
NCBI-GeneID:
112039752
NCBI-ProteinID:
XP_065629547
LinkDB
All DBs
Position
Unknown
AA seq
1014 aa
AA seq
DB search
MGRCSDSLKAWVSDQLISLLGYSQPTLVQYVIALAKQATSTGDLVNKLSVECGSLASSTD
TLHGFAEEIFTRVPRKAAAKNDSSVTLYQKREKEAAMLARKQKTYAVLDAGDGEEDNVVV
HHRKRFRKKIESDDDGSESEEERLVRDQREREQLERREQLEQNIRNRDLLGTRELLMEPI
DALKQDDIIALRRVSRQEYLKKREKNKVEELRDDIEDEEYLFDGVKLTEAEYGELRHKKE
LYEIVKKKKKKQAVEVDDTSEYKIPEAYDQEGSVNQEKRFDVSLKLCRDQEGVGDKMNPF
AEQEAWEDYQIGKAMLKYGSKNKKQISDDDYQFVFEDQIDFIKTSVVDGYNTDNEEVSKL
LEKKAKSALERLQEERKSLPIYSYRDELLQAIQDYQVVVIVGETGSGKTTQIPQYXGYTK
RGKIGCTQPRRVAAMSVAARVSHEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLRE
FLAEPDLESYSVLMVDEAHERTLSTDILFGLVKDVARSRPDLKLLISSATLDAEKFSDFF
YSAPIFSFPGRRYPIEINHTKAPEADYLDAAIFTVLHIHVKEEPGDILVFLTGQEEIETV
EENLKHRTKALGTKIAELIICPIYANLPIELQSKIFEPTPEGARKVVLATNIAETSLTID
GIKYVIDPGFCKMKSYNPRTGMESLLVAPISKASANQRKGRAGRTGPGKCFRLYTVCSYN
DLEDNTTLEIKRTNLANVVLILKSLGIHDLLKFDFMDSPTPEALMEALELLFSLNALNER
GELTMLGRRMAEFPLDPMLSKAIVASDKYKCSDEMISIAAMLSVGNSIFYRPKDKQVHAD
NARMNFHSGNVGDHIALLNVYNSWKETGYLAQWCYENYVQIRSMKPARDIRDQLEGLLER
VGIELNSNANDLESIKKAITSGFFPHSARLQTNGSYRTVKPPQAVHMHPSSGLAQVLPRC
VLYHELVLTTKAYMRQVTELKWEWLVEIAPYWYQLKDAEDLGTKTKSRGEMKRL
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggggaggtgcagcgacagtttgaaggcatgggtatctgatcagttgatttcgctgctg
ggatattcacagcccacgttggttcaatacgttattgcactggctaagcaagcgacgtca
actggtgatttggtgaacaagctttcagtggaatgtggatcattggcttcatcaactgac
acccttcatgggtttgctgaagaaatcttcactagggtaccccgaaaagccgcggcgaag
aatgacagtagtgtaaccctttatcagaaacgagagaaggaggctgcaatgttggcaaga
aagcagaagacttatgcagttttagatgctggtgacggtgaagaagataatgttgttgtt
catcatagaaaacgtttcaggaagaagattgaaagtgatgatgatggttcagagtcagaa
gaggagagactagtgcgtgaccaaagagagagggagcaactagagagaagggagcaacta
gagcaaaatataagaaaccgggatttgttagggacacgagagttattaatggagcctatt
gatgctttgaagcaagatgacattatagctttaagaagagtttcaaggcaagagtacttg
aagaaaagggagaaaaacaaagtagaggaattaagagatgatatcgaagatgaggaatat
ctatttgatggggtgaagcttactgaagctgaatatggtgagttaaggcacaagaaggaa
ttgtatgagatcgtgaagaagaagaagaagaagcaagcagtggaggttgatgatacaagt
gagtacaaaattcctgaagcctatgatcaagaaggaagtgttaatcaggaaaagagattt
gatgtttctttgaaactttgcagagaccaagaaggtgttggggataaaatgaaccctttt
gcagaacaagaggcttgggaggattatcaaattggaaaggcaatgctgaaatatggttca
aagaataaaaagcaaatatctgatgatgactatcagtttgtgtttgaggatcagattgat
tttatcaaaacttcagttgtggatggttacaatactgacaatgaggaggtgtccaagttg
cttgagaagaaggcaaaatcagctttggagaggcttcaagaggagagaaaatctttacct
atctattcatatcgcgatgaactgcttcaagccattcaagattatcaagttgttgttatt
gttggtgaaactggttctgggaagactacacagataccccaatatnctggatacacaaag
cgcggaaagattggatgcacacagccacgacgagttgctgctatgagtgttgctgctcga
gtttctcatgaaatgggtgtcaaacttggccatgaggtaggttattctatccgttttgaa
gattgcacttcagaaaagactgttctgaaatatatgacagatgggatgttgttgcgagag
tttctggctgaaccagatttggaaagctatagtgtgttaatggtggatgaggcccatgaa
agaactctctcaactgatattctatttggattggtgaaggatgttgctcgatcccgccct
gatcttaagttactaatctcaagtgcaacacttgatgcagagaaatttagtgattttttt
tattctgctccaatctttagctttccagggaggcgctatcctattgaaataaaccacacg
aaagctccggaagctgattacttggatgcagctatatttactgttcttcatattcatgtg
aaggaagaacctggagatatattggttttcttgactggtcaagaagagattgaaacagta
gaagaaaatttaaagcacaggacaaaggcactagggacaaagattgctgaactgattatc
tgcccaatatatgcaaacctaccaattgagctccaatcaaaaatatttgaacccactcct
gaaggagcaaggaaagttgttcttgctacaaatatagctgaaacctccttgactattgat
gggatcaagtatgtaattgatccaggcttttgtaaaatgaaatcttataatccaaggact
ggaatggagtcattgctagttgctccaatatcaaaagcatcagctaatcagaggaaaggt
cgagcaggaagaacaggtcctggaaaatgcttccggttatatactgtctgcagttataat
gatttggaagataatactacactagaaatcaaaaggactaaccttgcaaatgttgtcctt
attcttaagagccttgggatccatgacttgctgaagtttgattttatggactcgcctaca
cctgaagcattaatggaagccttggaactactcttttctttgaatgctttgaacgaaaga
ggcgagctaactatgttaggtagacggatggcagagttccctcttgatcccatgctatcc
aaagcaatagttgcttctgataaatacaagtgctcagatgaaatgatttccattgctgct
atgctttcggttggtaattccatcttttatcggccaaaggacaaacaagtccatgctgac
aatgcacgaatgaattttcattctggaaatgtgggggatcacattgcattgctaaatgtc
tacaattcatggaaggagacaggttacttggcacaatggtgctatgaaaattatgtacaa
attaggagtatgaaacctgctagggacatacgtgatcaacttgaggggctcttggaaagg
gttggaattgaactaaactctaatgccaatgatttagagtctataaaaaaggctataaca
tcaggtttttttccacactctgcaaggctacaaacaaatgggtcttaccggacagtcaaa
cctccacaggctgttcacatgcacccaagctcagggctagcacaagtacttccaagatgt
gttctataccatgaattggtgctcacaaccaaggcatatatgagacaggtaacagaacta
aagtgggagtggttggtggaaatagccccgtactggtaccagcttaaggatgctgaagat
ttgggtacaaagacaaagtctcgtggagaaatgaagcgattgtag
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