Quercus suber (cork oak): 112040556
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Entry
112040556 CDS
T05868
Name
(RefSeq) uncharacterized protein LOC112040556 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112040556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112040556
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112040556
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112040556
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
DUF5965
Motif
Other DBs
NCBI-GeneID:
112040556
NCBI-ProteinID:
XP_065632182
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVDRNQEDFDEFSDVDELYITLPLDKVES
LEDLVVIGPPSLVKGTPVLSLKTSLVASAPQVPATAAPNQQGVVQEQVEDSASQDSNSDT
VARTPPAKNSVIGSSAVSTPVGSHATPIVPVHNLSSVSTATVSLPGSASVRGAMENSGPV
NSSSPLSLPTAAKEEDSFPGHRSSPSLSDTGLVRGIGRGGLSSQPSASIPLSPSNVVPTN
GAVGAVPTASDMAKRNILGADERLGSSGMVQPLVSPLSNRIILPQAAKANDGTGLIDTSN
VGDPVTIGGRIFSPPVVPGMQWRTGSTFQNQNEAGQFRGRTEIAPDQREKYVQRLQQVQQ
QGHSTLLSMPPLSGGNHKQFSAQQQSPLLQQVPFLVCSFQYFGCVLSLNHIQLLMGKFSI
DQDFSDCSFVTN
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagccgcaaacttcagggcgagatagatcgagttctcaagaaggttcaagaa
ggcgtcgatgtgttcgacagtatttggaacaaggtttacgatacggataatgcgaaccag
aaggagaagttcgaggcggacttgaaaaaggagattaagaaattacagaggtacagagac
caaatcaagacatggattcagtctagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctggtggatgctcgcaaacttattgagcgtgaaatggaaagatttaagatc
tgtgaaaaggagactaagacaaaagcattctctaaagaaggactgggtcaacaacctaaa
actgatccaagggagaaggctaaatcagagacaagggattggttgaacaatgtggttggg
gagttggagtctcagattgatagctttgaagctgagttggaggggctatctgttaagaag
ggaaagactaggccaccaagactgacacatttagagacatccattacccggcacaaggct
catattatgaagttggaactaatcttgaggctactggataatgatgaactgagtcctgag
caggttaatgatgttaaggactttttggaagactatgtggaccgtaatcaggaggatttt
gatgaatttagtgatgttgacgagctttacatcacgttaccattagacaaggtggagtct
cttgaagatttggttgtaattggtcctcccagtcttgttaagggtacacctgttcttagc
ttgaagacatcattggtagcatcagcacctcaagtgcctgccactgctgcacctaatcag
cagggtgttgtccaggagcaagttgaagattcagcttcccaggatagtaattctgatact
gttgcaagaactccacctgccaaaaatagtgtaattggttcttctgcagtatcaacacca
gttgggagtcatgcaacccctattgttccagttcataatttatccagtgtctccactgct
acagtgagccttccaggttcagcttctgttcgaggtgccatggagaacagtggtcctgtc
aattcttcttctcctttgagtctgcctactgctgcaaaggaagaagatagttttcctggc
cacagatcatctccatctctttctgataccggacttgtaaggggcattggtagaggtggc
ctctccagccaaccatcagctagtattcctcttagtcctagcaatgtagttcctaccaat
ggagctgttggtgcagtccctacagcctcggacatggcaaagagaaacattttaggagct
gatgagagacttgggagtagtggcatggtgcagcctttggtttccccactaagtaataga
attattttgcctcaggctgccaaggcaaatgatggaactggcttgattgatactagtaat
gttggtgatcctgtaactataggtggcagaatcttttcccctcctgtggtccctggtatg
caatggaggactggaagtacctttcagaatcagaatgaagcaggccaatttcgtggaaga
accgaaattgcacctgatcagcgggagaaatatgtgcaacgccttcaacaagtgcaacaa
caaggtcacagtacccttcttagcatgccgcctctttctggaggaaatcataagcagttt
tctgctcaacagcaaagcccactcttgcagcaggtgccctttcttgtttgttcttttcaa
tattttggttgtgttttgtctctaaaccacattcaacttctcatgggaaaatttagtatt
gaccaagatttttcagactgcagttttgtgactaattag
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