Quercus suber (cork oak): 112040745
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Entry
112040745 CDS
T05868
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03030
DNA replication
qsu03410
Base excision repair
qsu03420
Nucleotide excision repair
qsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112040745
03410 Base excision repair
112040745
03420 Nucleotide excision repair
112040745
03430 Mismatch repair
112040745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qsu03032
]
112040745
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112040745
DNA replication proteins [BR:
qsu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
112040745
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
112040745
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
AAA_30
DNA_pol3_delta
Rad17
PTCB-BRCT
AAA_19
BRCT_2
Gp44_lid
nSTAND3
AAA_18
RuvB_N
AAA_5
Zeta_toxin
AAA_assoc_2
AAA_16
AAA_14
Sigma54_activ_2
AAA_24
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
112040745
NCBI-ProteinID:
XP_023929406
LinkDB
All DBs
Position
Unknown
AA seq
1014 aa
AA seq
DB search
MAENKQADIRKWFMKSHDKGNAKESKPAIPAPTNKSQPEKPAHASPESSGRRKTSKYFAT
DKQKPKDEKETEELPTKRKAQKHNDESVKPPPAKKVHIVDDDDDDDFVFSSSRKKSNDVT
PSKKLKSGLGRGIAQKPVDIEEGDEDDDKDFETPLKSSGRGRGGRGSSAAPAGGRGRGGA
QKPVAIEEGDEDDDKDIETPLKSGGRGRGGRGSSAAPAGGRGRGGGRGGFMSFGERKDPP
HKGEKEVPEGAPDCLVGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTNYLLCDE
DIGGRKSSKAKELGTAFLTEDGLFDMIRASKPAKAPVQEESDRPVDKVAPLPKKSPQKIE
TKKDSIGNSLATNVSGKGLTSGVSPAKHKTKTVAKSDLTWTEKYRPKVPNDIIGNQSLVK
QLHDWLTNWNEQFLDTGNKKKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQAI
EVNASDSRGKADAKIEKGIGGSNANSIKELVSNEALSVNMDRSKHPKTVLIMDEVDGMSA
GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQIA
TAEGLQVNQIALEELAERVNGDMRMAINQLQYMSLSMSVIQYDDIRQRLLSSAKDEDISP
FTAVDKLFGYNAGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGKDDNGIKRMNLI
ARAAESIGDGDIFNVQIRRYRQWQLSQSSSLASSIIPAALLRGQREILQQGERNFNRFGG
WLGKNSTMGKNLRLLEDLHVHFLASRESSSGRETVRVEYLTLVLKRLTGPLRELPKDEAV
QKVVEFMNIYSISQEDFDTIVELSKFQGHPNPLDGIQPAVKAALTKAYKEGSKTRMVRAA
DLVTLPGVKKAPKKRIAAFLEPSDDGLVDGGSTLAEGEEENSSDTDELEGSANGEKLQME
LQSLNSKGMQVELDLKGTGNSSAKKTPAGRGKGGSGSSEKKGARGSGAGAKRKR
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaataagcaggcagatataaggaagtggtttatgaaatcccatgacaagggc
aatgccaaggaatccaagcctgcaattcctgccccaaccaataaatcacagcccgaaaaa
ccggctcatgcaagcccagaaagttcgggtagaaggaaaactagcaagtattttgctact
gacaaacaaaagccaaaagatgaaaaggagacagaggaacttccaacaaaacgaaaggct
caaaagcataatgatgaatcagttaaacccccacctgctaaaaaagttcacatagttgac
gacgatgacgatgacgactttgtcttttctagttctaggaagaaatcgaatgatgtgact
cctagtaagaagttgaaaagtggcttgggtaggggaattgcacagaaacctgtagacatt
gaagaaggtgatgaggatgatgataaagattttgaaactcctcttaagtctagtggaagg
ggacgtggtggaagaggttcatcagcagcaccagctggtggaagaggcagaggtggtgca
cagaaacctgtagccattgaagaaggcgatgaggatgatgataaagatattgaaactcct
cttaagtctggtggaaggggacgtggtggaagaggttcatcagcagcaccagctggtgga
agaggcagaggtggtggacggggtggatttatgagctttggagaaaggaaagatccccca
cataaaggagaaaaggaagtccctgagggtgctcccgattgtttagttggtttaactttt
gtaattagtggaacacttgacagcctagagcgtgaagaagctgaagatttgattaaacgc
cacggtggtcgtgtcactggatccatcagcaagaaaacgaattatcttttatgtgatgaa
gatattgggggtcggaaatcctcaaaagctaaagagctaggtactgcctttctcactgag
gatggattgtttgatatgatccgtgcatcaaaacctgcaaaagcacctgtacaagaagaa
tctgacaggccagtggataaggttgcacctctaccaaagaaaagcccacagaaaatagaa
acaaagaaagatagcattggcaactcgttggcaacaaatgtatctggcaaaggattgacc
tcaggggtgtccccagctaagcataaaactaaaacagttgcgaagagtgatttaacatgg
acggaaaaatatagaccaaaggttccaaatgatattattggaaatcagtcactggttaag
caacttcatgattggttgacaaattggaatgagcaatttcttgatactggaaataagaaa
aagggaaaaaaacaaaatgattctggtgccaaaaaagctgtgctattaagtggaactcct
ggtataggaaaaactacctctgcaaagttggttagtcagatgcttggtttccaggcaata
gaggtaaatgctagcgacagtcgtgggaaggctgatgccaaaattgagaaaggaattggt
ggaagcaacgcgaattctataaaggaacttgtcagcaatgaggccttgagtgtcaacatg
gatcgatcaaagcatccaaaaactgtgctgattatggacgaggttgatgggatgtctgct
ggagataggggtggaattgctgaccttattgctagcatcaagatttccaaaattcctatt
atctgcatttgtaatgatcgatacagtcagaaactaaaaagtcttgtgaactactgtttg
cttctcagctttcgaaaacctacgaaacagcagatggcaaagaggttaatgcaaattgca
actgcagaagggcttcaagttaatcagattgctcttgaggaacttgcagaaagagttaat
ggagatatgcgcatggcaataaaccagttgcagtatatgagcctctccatgtcagtcatt
caatatgatgacattaggcagcgtcttcttagcagtgcaaaggatgaagatatttcacct
ttcactgctgttgacaagctgtttggttataatgcggggaagttgaggatggatgagcgg
attgacctgagcatgagtgatcctgatctagtccctcttcttattcaggaaaattatatt
aattacaggccaagttctgctggtaaggatgacaatggaatcaaacgtatgaacttgatt
gcccgtgctgctgaatccattggtgatggggatattttcaatgttcaaattcgacggtat
cgacagtggcaactctctcaaagtagttcacttgcatcgtctataatccctgctgcactg
ttgcgtgggcagagggaaatacttcaacagggagagaggaattttaatagatttggaggg
tggctgggaaagaactcaacaatgggtaaaaatctgaggcttttggaggatttgcatgtt
cattttctcgcttctcgtgaatctagttcggggagggaaaccgtgcgagtagaatacctt
actcttgtcctgaaacgattgactgggccactgcgggagctgcctaaggatgaagcagtt
caaaaagttgttgagttcatgaatatatactcaattagtcaggaggatttcgatacaatt
gtggagctatcaaaatttcaggggcatccaaatccactggatggcatacagcctgctgtg
aaagctgctctcaccaaagcttacaaagaaggaagcaaaacaagaatggtacgagctgca
gatttagtcacacttcctggagtgaaaaaagctcctaaaaagcggattgcagcatttctg
gagccatctgatgatggattagttgatggtggtagcacattggcagaaggtgaagaagaa
aattcttcagatacggatgagcttgaaggttctgccaatggtgagaagctacagatggaa
cttcagagtttgaattcaaaaggaatgcaagtggagttggatctcaagggcacaggaaat
tcaagtgctaagaaaacaccggctggcagaggaaaaggtggttccggatcttcagaaaag
aaaggtgcacggggttcaggggctggtgccaagagaaagagatga
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integrated database retrieval system
