Quercus suber (cork oak): 136061308
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Entry
136061308 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136061308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
136061308
03019 Messenger RNA biogenesis [BR:
qsu03019
]
136061308
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136061308
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136061308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
136061308
NCBI-ProteinID:
XP_065622424
LinkDB
All DBs
Position
Unknown
AA seq
1025 aa
AA seq
DB search
MDSEKLSSVNPRATTATATTEKPPPPPILERFRALLKQRDDELRASAGGGVDDDDDEIDE
SFVVPPPSSEEIVELYEMFLGELTFNSKPVITDLTIIAGEQKEHGKGIANAICARIIEVR
PVEQKLPSLYXFRQYVKNIGRDYVRHFSPRLPEVFCEAYRQVHPNQYNSMRHLFGTWSAV
FPPSVLNKIEAQLQFSPSVNNQSSVLATMRASESPRPTHGIHVNPKYLRQLEHSTLDTNI
QHPRGTSALKMYGQKPAIPYDEFDPGHAEVVSSQVGAQRLSSTGDAGHTPFAFGANKVHP
PSTARLARPSSPSRTGPDRSLSLAGDEFAAENSPRRFVDRASPSHPFEYGLGRAIGRDDE
TSGWQRKHYSDNNQKTTAVYHLGNGHEHQRPRALIDAYGNDTGKRSYNNKPLQVQRLDIN
DIDSKVAPASWQNTEEEEFNWEDMSPNLGDRGTSNDFLSSAVPPFGSFRTRPGFGAQSAA
PLEPDNRSSWLSQAQLPAVDDSSINAEDPVSLSSFGRGSTRKISGFRTERNQIRDSRYPQ
EAWNMPPHLAKGRERNFHMPLLASGTSPSDCEKMSPLIDKLPDADPQICGPPTITSRIGP
SLDSFGVEPRPGVVPSYMGVRPPLNVHNSHPQHLLPNFMQQKHMRSQFQSINASNTVNNL
GPNRSFYIPEQQMDGFGNKELSSTKLQQLPSQHAGLIPLSQAQVTSLQPQFLPSQEVHQS
AAAVLPPHFLAAPLNHGYNSRGHGATVSTGPSNPIPVVQLNILNRPLHLQGGSLPPLPPG
PPPMPSQMMPLTQNAVPGVSSQQPSSAFPGLFDSLMAQGLISLNKQAQDSVGVDFNADLL
KVRHESAINALYADLPRQCTTCGLRFKSQEEHRSHMNWHVTKNRMSKNRKQKPSRKWFVS
VSMWLSGAEALGAEAVPGFLPTETVVEKKDDEEMAVPADEDQNACALCGEPFEEFYSDEA
EEWMYKGXIYSNAPSGLTVGMDRSQLGPIVHAKCRSESSVVSSEDFRQEDGGITAEGSQR
KRMRI
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggactccgaaaagctctcctccgttaaccctagggccaccaccgcgaccgctactacc
gaaaagcctcctccgccgccgattctcgagcggttcagggcgctgctgaagcagcgggac
gacgaactcagggcttcggccggaggaggagtcgacgacgacgacgatgaaatcgacgag
agcttcgtcgttccgccgccgagttccgaggaaattgtggagctctacgagatgtttttg
ggggagcttactttcaattcgaagccagttattacggatctcacgataatcgccggcgag
cagaaggagcacgggaaaggcatcgcgaatgcgatttgcgctcggattatcgaggttcgt
ccagtcgagcaaaaacttccttcactatatnnttttagacagtatgtcaagaatattggc
cgtgattacgtaaggcatttctctccgcgtctgcctgaggttttctgtgaggcatacagg
caagttcacccaaatcagtataattctatgcgacatctctttggcacctggtcagcagta
tttccaccttctgtccttaataagattgaggcacaactgcaattttctccttcagtaaat
aatcaatcatctgttttggctaccatgagggcttctgaatctccacgaccaacacatggc
attcatgttaacccaaagtacctgcgtcagttggaacattcaactctggatactaatatt
cagcatcctagaggaacttccgctttaaaaatgtatggtcaaaaacctgccattccatat
gatgagtttgatcctggtcatgcagaggttgtatcctcacaggttggagcccaaagattg
agctcaactggagatgcaggtcatacaccttttgcctttggggctaataaggtgcatcca
ccttcaactgccagacttgcaagaccctcttcgccttcaagaactgggcctgataggtct
ttatcattagcaggtgatgaatttgctgcagaaaattctcctagaaggtttgttgatagg
gcctctccatctcatccatttgagtatggacttggtagagcaattggtagagatgatgaa
acaagtggctggcagagaaaacactattctgataataatcagaaaactactgcagtttac
caccttggtaatggacatgagcaccaaagaccaagagctttaattgatgcatatggaaat
gacacagggaagagatcttataacaataagcctctgcaggttcaacgcctggacataaat
gatatagacagtaaggtcgctccagcatcatggcagaatactgaagaggaagagtttaat
tgggaagatatgagccccaatttaggagaccgcggtacaagtaatgatttcttgtcatca
gctgttccaccttttgggagctttagaacaaggccgggctttggagcgcagagtgctgcc
cctttggagcctgataataggagcagttggttgagtcaggctcagcttcctgcagttgat
gattcttctataaatgctgaagatccagtctccttatcaagttttggtcgtggatcaacg
cggaagatatctggattccgaactgagagaaatcagattcgggattctcgctatcctcag
gaggcctggaatatgcctccccatctcgccaaaggaagagagaggaatttccatatgccc
ttattggcaagcggtacatctccatcagattgtgaaaaaatgtctcctcttatagataag
cttccagatgctgacccacaaatttgcggaccccccacaattacatcaagaattggtcct
agtcttgactcttttggtgtggagccacggcctggtgttgtaccctcatatatgggggta
agacctcccctaaatgtgcataactctcacccacagcatctgctgcctaattttatgcag
cagaaacatatgaggagccaattccagtcaataaatgctagcaatactgtcaataatcta
ggtccaaataggtctttttatatccctgagcagcagatggatggttttggaaacaaggag
ctgagttctacaaagctgcaacaattgcctagtcagcatgcaggactaattcctctaagc
caggcacaagtcacttctttacagccacaatttcttccatctcaggaggtgcatcaatct
gcagcagctgtgttgccacctcattttctggcagcccctttgaatcatggatataactca
cgagggcatggtgccactgttagtacaggtccatcaaatcctatacctgttgtacagttg
aatatcctaaacaggcctttacatttacaggggggctcattgccacctctacctcctggc
ccccctcccatgccatcacaaatgatgcctctcacacaaaatgctgttcctggtgtctct
agtcaacagccgagcagtgcatttcctggattgtttgattctctcatggctcagggtttg
atctcattgaacaaacaagctcaggattctgtaggagttgattttaatgcggaccttctc
aaggtgcgtcatgagtctgcaataaatgcgctatatgctgatctccccagacaatgcaca
acctgtggccttagattcaaaagccaagaagagcaccgtagtcatatgaattggcatgta
actaagaatcgtatgtctaagaaccgaaagcagaagccttctcgtaagtggtttgtaagt
gtgagtatgtggctcagtggtgcagaagcattaggagctgaagcagttcctgggttttta
cctaccgagaccgttgtagaaaagaaggatgatgaagaaatggctgtacctgctgatgaa
gatcagaatgcatgtgcattatgtggagagccttttgaagagttttacagtgatgaggca
gaagaatggatgtataaggggnctatttactcaaatgcacccagtggcttgacagtaggc
atggataggtctcagttaggcccaatagtgcatgctaagtgccggtctgaatctagtgtg
gtttcctctgaagattttagacaagaagacgggggaattactgcagagggtagtcaaaga
aaacgtatgcggatttaa
DBGET
integrated database retrieval system
