Quercus suber (cork oak): 136061704
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Entry
136061704 CDS
T05868
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
qsu
Quercus suber (cork oak)
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
136061704
03036 Chromosome and associated proteins [BR:
qsu03036
]
136061704
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
136061704
Chromosome and associated proteins [BR:
qsu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
136061704
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
HHH_9
Spt6_S1
Tex_central_region
HTH_44
Tex_YqgF
Tex_N
SH2
S1
Motif
Other DBs
NCBI-GeneID:
136061704
NCBI-ProteinID:
XP_065615882
LinkDB
All DBs
Position
Unknown
AA seq
2048 aa
AA seq
DB search
MARKRRSRIVDDDDEDENEPALASNNEDEEDDEEDLDEFEDDGFLVDDNDDDDDEESEEE
QQSYKGKQKKKRKRKRKSLRSLMLDDDDLELIRENENLGITQSEKGGAKFKRLKKAVVDT
ELEGPSGISDDDGPLFSDIAEEDDYVPDDEEDEMANFIVDHGKFYGKGAPIRNLNEKKSR
HASKASSAVRKASYTFGNADEVLNLNEQVLAESARPDDSNDFAPFILKDKYMTEKDASIK
EIDVPERMQIFGEVIGPAPVDEMSIIEESSWILGQLGTYMYPLFCKMPEQAEGFDICKRI
RKEDIMSFLKLHHVEKCDIPFIAMYRKEQCLSLLKDPEQDEESRDKVDAERMPKLKWHKV
LWAIKELDKKWLHLQKRKSALQRYYNKRYEEECSNIVSGARLAFVKELFETTTKSLKKAE
SERDVDDVDMEFSLHFPPTEGGNGGKYKRPAKKSQYSYCNKAGLWELAHKFGDSKQFGFQ
ITLERTGFKFDEDPEEFPVEIASNFMCEMFETPEAVLKGARHMAAVDISCETLFRKHARG
IFMDRALVSTSPTPKGNREIDCFHQYAGVKWLHNKPLSKFEDMQWLLIQKAEEEKLLEIT
IKLPESALDELISASYDVYLRDNDNRSAQIWNEQRKIILEDAIKNFLLPSTEKEARALLT
TRAKNWLLIEYGKQFWNRVSVAPYHCKKNVVNENKGTAPRVMACCWGPGKPETTFVMLDS
SGEVLDVLHAGSITKRSQNVIHQQQRKNDQQHVLKLMKNYRPHVIVLGAANVACTRLKDD
IKEIIFKMVEENTGDISQVMDEISIVYGDESFAHIYEHSQISSEQLPGQPGIVKRAVALG
RYLQNPLAMIATLCGTQREIVSWKLSSLDHYLTGDEKWEMIEWVMVDVTNQVGLDLNLAA
SHAWLFAPLQFVSGLGPRKVASLQRQLLGGKEIRNRRELISCGLRGKNDFYNAVGFLRVS
CSGLHYTGKDTNLLDNTRIHPESYSLAEDLAKAVHKFHVQDDANNADSLEEPVQHINDNP
QLLKSFDITDYSEKYEIEMGENRRETLYDIRMELLHGFRDPRRPYEEPTQDEEFDMVSGK
NGNALAEGRIVQATVRNLQSHRAFCVLDSGLTGVLVEEDFSDNADDISLADKLHVGDILT
CKIKQIEKDKFQVCLTCKESELKSNGDQNSSEADPYYRGGQSSLRSQQGKAHNGELAKKP
FNPRMIVHPHFQNLTLNQAMEFLSNKDAGEFIFRPSARGPSYLTLTLKICDGLFVHKDIT
EGGKDHSNITSLLRLGKTLKIGDDYFEDIDEVVDRYVDPLVTHLKTMVSFRKFKRGSKAE
VDEVLRVEKSEYPTRIVYCFGISYEHPGTFILSYIKTTHLRHEFVGLHPKGFKFRKQMFG
KIEHLVAYFQKHIDDLQHESAPMQKSAFGGSSVKTSDWGSNDSGWQSQPKSGLDKSTPFP
RDTNDYGDDVGDGGQGLGRGFGHGRGRGRGRGHGRGRDDSSHENKDSSYDTYSKSDFGSK
GGDGGDGGWSTFHSEKAQNSPTWDSDCTNTNGGNWEGVGDGTGSWSGGARDNNNKTFFGE
LGSGGTDGVGGTSWGPSGGIGGWGDSTSSKGGGASGVTWGGSKGAESNSGGSQGGNNVHG
HGGASEKKNNTFFGELGSGGTDGVGGTSWGSSGGTGGWGDSSKGRGAGGWGDSSKGGGAG
GVIWGGSKGAESNSGGNQGVNNGCGHGGVSENNNNTFFGELGSGGTSWGPSGSTGGWGDS
SKGGGAGGVTWGGNKGSESNSGGNQEGNNGWSHRGSDGGWSNSPSAKIKNSPGKWDNNRT
NASGGNWSGGGDGTGGWSGVGSANFGNWDNNGEGGHTSGYKMGRSNDHGYGQGQGQGRGP
NRGRGRGRGRGCGRGRDSYNIGDEDNNHSGGTNTGGWSGGGRASFDNWDNNGEGGHTSGN
NMGCSNDHGYRQGRGHGPNRGRGRGEGCGRGRGQGRGRGRGHDSCNSGDDDNNYTSFSGL
GSGGTDSAGGTSWGPRGGTGGWGDNSKGRGASGGTWGGTWGAESNSGGSNGRGRGSGGDW
SRNAGSGW
NT seq
6147 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggaagagaaggtcacgcattgtcgacgatgatgatgaagacgaaaacgaacca
gctctagcttccaacaacgaagacgaagaagacgatgaagaagatttggatgagtttgag
gatgatgggtttttagtagatgataatgatgatgatgatgatgaagaatcggaggaagaa
caacaaagctataaaggcaaacaaaagaaaaagaggaaaaggaaaagaaaatcgttgagg
agtcttatgcttgatgacgacgatcttgagttgattcgagagaatgaaaacttgggcatt
actcaatcagagaagggaggtgcaaagtttaagcggctcaaaaaggctgtggttgacact
gaactggaaggaccctctggcatttcagatgacgatggaccactatttagtgatattgct
gaagaagatgattacgtgcctgatgatgaagaggatgaaatggcaaattttatagtggat
catggaaaattttatgggaagggagcccccataagaaatctgaatgaaaagaagtcaagg
catgcatcaaaagcttcatctgcagtaaggaaagctagttacacttttggcaatgctgat
gaagtactgaatcttaatgagcaagttctagctgagagtgccagacctgatgattctaat
gattttgcacctttcatcctcaaagacaagtacatgacagagaaggatgctagtataaag
gagattgacgtgcccgagaggatgcagatatttggggaagtcattgggcctgctccagtt
gacgaaatgagcattatagaggagagttcttggatacttggtcaacttgggacgtatatg
tatccattgttctgcaagatgccggaacaagctgaaggatttgatatatgtaaaagaatt
cgtaaggaagacattatgagctttttgaaattgcatcatgtggagaagtgtgatattccg
tttattgctatgtatcggaaggagcagtgcctgagtcttttgaaagacccagagcaagat
gaagaaagcagagataaggttgatgccgagagaatgcctaaactgaagtggcacaaggtt
ctttgggccatcaaggagcttgacaaaaagtggttacatcttcagaagcggaagagtgct
cttcagaggtactataacaagcgctatgaagaggaatgtagcaatattgtcagtggggca
agacttgcctttgttaaggagctctttgaaaccaccaccaagtctctgaagaaggctgaa
tctgagagagatgttgatgatgtggacatggagtttagcttacattttcctccaactgag
gggggtaatggtggaaaatataagaggcctgcaaagaaatcacaatatagctactgcaat
aaggctggcctgtgggagcttgcacacaagtttggtgactccaagcaatttggcttccaa
ataactttagagagaactggatttaagtttgatgaggatcctgaggaatttccagtggag
atagcttcaaattttatgtgtgaaatgtttgaaactcctgaagcagtgctcaaaggtgct
aggcacatggccgcagtggatatcagctgtgagacattgtttaggaaacatgcccgtggt
attttcatggatagagctttagtctcaacaagccctaccccaaaaggaaacagggaaata
gattgttttcaccagtatgcaggggtcaagtggctacacaacaaaccactctcaaaattt
gaggacatgcagtggctacttattcagaaggcggaagaagagaagctccttgaaattacc
ataaagttgccagagagtgccctggatgagttgataagtgcgtcctatgatgtttatctt
agagacaatgacaatagatctgctcaaatttggaacgaacagcgcaagataattctagag
gatgcaattaaaaattttcttcttccttccactgagaaggaagcaagagctctgttgacc
acccgagcaaaaaactggttacttatagaatatgggaagcagttctggaatagggtctct
gtggcgccatatcattgtaagaaaaatgttgttaatgagaataaaggtactgcaccaagg
gtaatggcctgttgttggggtccaggaaagccagaaactacatttgtaatgttggattct
tcaggagaagtgcttgatgtgttgcatgctgggtcaattactaaacggtcacaaaatgtt
attcaccagcaacagaggaagaatgaccaacagcatgttcttaagctcatgaaaaattat
cgtccacatgtcattgtcttaggtgctgctaatgtggcttgcacacggttgaaggatgat
atcaaagagatcatttttaaaatggtagaggagaatactggagatatcagccaagttatg
gatgagatcagcattgtttatggggatgaatcctttgctcatatttatgaacattcacag
atttcctcagaacagctgcctggacaaccaggcattgtaaagcgtgctgtggctctcggt
cgttacctccagaacccgttggctatgattgcaacattgtgtgggacccaaagagagata
gtatcttggaaacttagctccttggatcactatcttacaggtgatgagaagtgggagatg
atagaatgggttatggtggatgttactaaccaggtaggtctagacttgaacttggctgca
agccatgcctggctttttgcgcctttgcaattcgtttccgggcttggacctagaaaggtg
gcttcattacagaggcaattacttggaggtaaagaaattagaaatcgaagagagttaatt
agttgtggactgagaggaaagaacgatttctataatgcagttggttttttacgagttagt
tgcagtggactgcattatactggcaaagatactaatctgttggataatacaagaattcac
cctgagtcatatagtcttgcagaggatttggcaaaggcagttcataaatttcatgttcag
gatgatgcaaataatgcagattccctggaagagcctgtacagcacattaatgacaatcca
caactgctaaaaagttttgatattactgattattcggaaaaatatgaaatagaaatggga
gaaaacagaagagagactctttatgatattagaatggaacttcttcatggatttcgagat
cctcgaaggccttatgaagaaccaactcaggatgaggaatttgatatggtatctggaaaa
aatgggaatgctcttgctgaaggaagaatagtccaggcaacagttcgcaatttgcaatct
catcgagcattctgtgtgcttgactcaggcttgactggggtactcgtagaggaagacttt
tcagataatgctgatgacatttctttagcagacaagctgcatgtaggtgatattcttacc
tgcaagatcaaacaaatagaaaaagacaaattccaggtgtgtctgacttgtaaagaaagt
gaattaaagagtaatggagaccaaaactcttctgaagcagacccttattaccgtggaggc
cagagcagtttacgaagtcagcaggggaaagcccacaatggggagctagcaaagaagcct
ttcaacccaaggatgattgttcatcctcattttcagaatctaactttgaatcaagcaatg
gagttcctctcaaataaggatgctggagaatttatttttcgccctagtgccagaggtcca
tcttatcttactttaactctgaaaatctgtgatggactttttgtgcacaaagacatcacc
gaagggggaaaggatcacagcaatattacaagcttgcttcgtcttggaaagacattaaaa
ataggggatgattactttgaggatattgatgaggttgtggatcgttatgttgacccactg
gtaacccacttgaaaacaatggttagtttccgaaaattcaagaggggttcaaaagcagag
gttgatgaagtgttgagagtagaaaaatcagaatatccgactagaattgtttactgtttt
ggaatttcttatgagcatcctggaactttcatcttgtcttatataaaaaccacacatcta
cgtcatgagtttgttggtctgcatcccaagggattcaagtttaggaagcaaatgtttggg
aagattgagcatttggtggcatatttccagaagcatattgatgatttgcagcatgagtca
gcaccaatgcaaaaatctgcatttgggggttcttctgtaaagactagtgattggggaagc
aatgatagtggttggcaaagccagccaaaatcaggcttagacaaatctaccccttttcca
agagatacaaatgactatggagatgatgttggagatggtggccaaggccttggtcgtgga
tttgggcatgggcgtggacgtggtcgtggtcgtggtcatgggcgtgggcgtgatgacagc
agccatgaaaataaagattctagttatgatacatactcaaagtcagactttggttcgaag
ggtggagatgggggtgatggtggatggagcacttttcatagtgaaaaagctcagaattca
cccacatgggatagtgattgtactaatactaatggaggaaattgggagggtgtaggtgat
ggtacaggtagttggagtgggggtgcaagggataacaacaataagactttctttggtgag
ctgggcagtggtggaactgatggtgttggtggaacaagttggggacctagtggtggtata
ggtggttggggtgatagcactagcagtaagggtggaggtgcaagtggtgtcacttggggt
ggcagcaagggagctgagagtaatagtggtggcagtcaaggtggcaataatgtacatggc
catgggggtgcaagtgagaaaaaaaataatactttttttggtgagttgggcagtggtgga
actgatggtgttggtggaacaagctggggatctagtggtggcacaggtggttggggtgat
agcagtaagggtagaggtgcaggtggttggggcgatagcagtaagggtggaggtgcaggt
ggtgtcatttggggtggcagcaagggagctgagagtaatagtggtggcaatcaaggtgtt
aataatggatgtggccatgggggtgtaagtgagaacaacaataatactttttttggtgag
ttgggcagtggtggaacaagttggggacctagtggtagtacaggtggttggggtgatagc
agtaagggtggaggtgcaggtggtgtcacttggggtggcaacaagggatctgagagtaat
agtggtggcaatcaagagggcaataatggatggagccataggggtagtgatggtggatgg
agcaattctcctagtgccaaaattaaaaattcacctggaaaatgggataataatcgtact
aatgctagtggtggaaattggagtggtggtggtgatggaactggtggttggagtggggtt
gggagtgccaattttggcaattgggataacaatggggaaggtgggcatactagcggttac
aaaatgggtcgctccaatgaccatggttatggacaaggacaaggacaaggacgtggtcct
aatcgtggtcgaggtcgtggtcgaggtcgtggatgtggacgtggacgtgactcttataac
ataggggatgaggacaacaatcatagtggtggaactaatactggtggttggagtgggggt
gggagagccagttttgacaattgggataacaatggggaaggtgggcatactagtggtaac
aatatgggttgctccaatgaccatggttacagacaaggacgaggacatggtcctaatcgt
ggtcgaggtcgtggtgaaggttgtggacgtggccgtggccaaggtcgtgggcgtggacgt
ggacatgactcttgtaacagtggggatgatgacaacaattatacctcctttagtgggttg
ggcagtgggggaactgatagtgctggtggaacaagttggggacctcgtggtggtacaggt
ggttggggtgataacagtaagggtagaggtgcaagtggtggcacttggggtggcacttgg
ggagctgagagtaacagtggcggcagcaatggacgtggtcgtggatctgggggtgactgg
agtagaaatgctggtagtggctggtaa
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integrated database retrieval system
