Quercus suber (cork oak): 136067723
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Entry
136067723 CDS
T05868
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136067723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
136067723
Spliceosome [BR:
qsu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
136067723
Complex C
U5 SnRNP specific factors
136067723
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRO8NT
U5_2-snRNA_bdg
RRM_4
U6-snRNA_bdg
Motif
Other DBs
NCBI-GeneID:
136067723
NCBI-ProteinID:
XP_065630018
LinkDB
All DBs
Position
Unknown
AA seq
1505 aa
AA seq
DB search
MWNSGQIAPPGTTGSSIPPPPAAQPSYTVLPSPAEAEARLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFY
YDPLIHPITSINKDRHEKKIRDDEDDDDFFLPEGVEPLLRDTQLYTDTTAAGISLLFAPR
PFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQGVWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGT
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacagcggccagattgcgccgccggggaccactggctcgtccatccctccgccg
ccggcagcgcagccatcgtacacggtgctgccttcgccggccgaggccgaggcgcggctc
gaagagaaggcgaggaaatggcagcagctcaattcgaagcggtacagcgacaagcggaag
ttcgggtttgtcgagacgcagaaggaggacatgcctcctgagcacgtcagaaagatcatt
agagaccatggggacatgtcctctaagaaatatcgtcatgataaacgtgtctatcttgga
gcccttaaattcattccacatgcagtttacaagcttcttgagaatatgcctatgccatgg
gagcaggtccgcgatgtgaaggttttgtaccatatttctggggctattacatttgtgaac
gaaataccatgggttgttgaacctatatatttggctcagtggggtacaatgtggatcatg
atgcgaagggagaagagggatcgtcggcatttcaagagaatgcggtttccaccatttgat
gatgaggaacctccattggactatgctgataatcttctagatgttgatcctctggagcct
atccaattagagttggatgaagaagaggattctgctgtatatacttggttttatgaccat
aagcctcttgtgaaaacaaagcttataaatggtccaagttatcggaaatggcatctctct
cttcctatcatggcaactcttcatcggcttgcaggacagttgctttctgacttaattgac
cgcaactatttctacttgtttgacatggagtcattttttacagccaaagcattgaatatg
tgtatacctggtggacctaaatttgagcctttgtatcgtgacatggagaaaggtgatgag
gattggaatgagttcaatgatattaacaagctaattattcgatcacctctccggacagaa
tacagaattgcattccctcatctctacaacaatagaccaaggaaagtaaagctgtgtgtg
tatcacactcccatgatcatgtacataaaaaccgaggatcctgatttacctgctttttat
tatgatcctttaatacacccaataactagcattaacaaggaccggcatgaaaagaaaatt
cgtgatgatgaggatgatgatgatttcttcttgccagaaggggtggaacctctgttgagg
gacactcaactttatactgacaccacagctgctggaatttccttattgtttgccccacgc
ccttttaacatgagatctggtcggatgagacgtgcagaagacataccccttgtgtcggag
tggtataaagagcattgtcctccatcctatccggttaaagttcgagtcagctatcaaaaa
ttgctaaaatgctttgtgttgaatgaactgcatcacagacctcctaaggctcaaaagaag
aagcacttgttccgatctcttcaagcaactaagtttttccaaaccacagaacttgattgg
gctgaagctggtcttcaagtttgtaagcagggctataacatgctaaatctgctgatacat
aggaaaaatttaaattacctccaccttgattataatttcaatctgaagccggtgaagacc
ctcactacaaaagagcgcaagaagtcacgttttggtaatgctttccatctgtgtcgtgag
attctgcgcttgacaaagcttgtggttgatgccaatatccagtttcgcctgggtaatgtg
gatgccttccaattggccgatggcttgcaatatacattttctcatgttggtcaactgacc
ggcatgtaccgttacaaatataggcttatgaggcagatcagaatgtgcaaagacttgaaa
cacttgatctactatcggttcaatactggtccagttgggaaaggacctggatgtgggttt
tgggcaccaatgtggagagtgtggttgttctttctacgtggtatagtgcctctcctggaa
cggtggttagggaatttacttgcacgtcaatttgaagggcgccattcgaaaggagtggct
aagacagttactaagcaacgtgttgaaagccactttgatttggagctaagagcagctgtt
atgcatgatgtgcttgatgctatgccagagggcatcaagcagaataaagccagaacaata
ttgcagcatctcagtgaggcatggcgatgttggaaagcaaatattccctggaaggttcct
ggtttgccagttcccattgagaacatgattcttcgttatgttaagtcaaaagctgactgg
tggacaaatgttgcccactataaccgtgagcgtataaaaagaggagccaccgtcgataag
acagtttgtcggaagaatcttggaagactgactcgtctttggttgaaggcagaacaggaa
cgacaacacaactacttgaaagatggtccatatgtcacaccagaagaagcagttgccatt
tacactacgacagtgcattggttggagtcaagaaagttctctcccatcccgttccctcca
ttatcatataagcatgacacaaaacttcttatccttgctttggagcggttgaaggaatct
tatagtgtagctgtgaggttaaaccagcttcaaagagaagagttgggtcttattgaacaa
gcctatgataatccacatgaagcactgtcacgaattaagcgtcacctgctcactcagcgt
gcattcaaagaagttggcatagaatttatggatttgtacagttatctcattccggtttat
gagattgagcctcttgagaagattacagatgcatatcttgatcaatatttatggtatgaa
ggtgacaaacgccatctttttccaaattggatcaagcctgcagattcagagcctccccca
cttttggtttataaatggtgtcagggtataaacaatttacaaggagtatgggacacaagt
gatggccaatgtgtggtgatgcttcaaacaaagtttgaaaagttctttgagaagattgac
ttgacaatgttaaacaggctcttgcgattggttcttgaccacaacattgctgattatgtc
actgcaaagaacaatgttgtgttgtcttacaaggatatgagtcacacaaactcatatggt
cttatccgtggtctccagtttgcttcttttgttgtacagtattacggacttgtgctggat
ctcttgctccttggattgactcgagctagtgagattgctgggcccccacagatgcctaat
gagttcattacttattgggacacgaaagttgagacacggcaccctattcggctttattct
cgatacatagacagggtccacatattgttccgcttcacccacgaagaggctcgagacctt
atccagcggtatcttactgagcatcctgatcctaacaatgaaaatatggttggatataac
aacaagaagtgctggcctagagatgcaagaatgaggctcatgaaacacgatgtaaatctt
gggaggagtgttttctgggatatgaagaaccgtcttcctcgaagcatcactacattggag
tgggagaacagttttgtttctgtatacagcaaggacaatccaaacttgcttttcagcatg
tgtgggtttgaagttcggatacttcctaaaataaggatgacccaagaagcattcagtaac
acaagagatggtgtttggaatctgcagaatgaacagaccaaagaacggactgcagtggct
ttcttgcgggttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagattctt
atgtcttcaggatccacaacatttacaaaaattgtcaataaatggaatacagccttgata
ggtctcatgacttatttccgtgaagccactgtgcatactcaagagctgttagatttgctg
gttaaatgtgaaaataaaatccaaacccgtattaagattgggttgaactcaaagatgcct
agcaggttccctcctgtcattttctacactccaaaggaaatcggaggacttggcatgctt
tctatgggtcatatattgattccacaaagtgacctccgttacagccagcagacagatgtt
ggtgtaacccactttaggagtggaatgagccatgaagaggaccagctgattccaaatctt
tatcgatatatacagccatgggagagtgagttcatagattcacagcgtgtttgggcagaa
tatgcattgaagaggcaggaagctcaggctcaaaataggcgtttgacccttgaagatttg
gaagattcatgggacaggggcatacctcgtataaacactttgtttcagaaggaccgacac
acattggcatatgacaaaggatggagggtgcgtactgacttcaaacagtaccaagtttta
aaacagaaccctttctggtggacacaccagaggcatgatgggaaactttggaacttgaac
aattatcgaactgatgtcattcaagctttgggtggtgttgagggaattcttgagcatact
ttattcaaaggaacatag
DBGET
integrated database retrieval system
