Qipengyuania xiapuensis: K3162_12925
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Entry
K3162_12925 CDS
T10368
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
qxi Qipengyuania xiapuensis
Pathway
qxi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3162_12925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qxi03400
]
K3162_12925 (mfd)
Enzymes [BR:
qxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3162_12925 (mfd)
DNA repair and recombination proteins [BR:
qxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3162_12925 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
MFD_D3
Cas3-like_C_2
SecA_DEAD
UB2H
AAA_30
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QZD92416
LinkDB
All DBs
Position
complement(2576860..2580351)
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AA seq
1163 aa
AA seq
DB search
MPDLSRILKADTPLTLAQVARGAQPLVMADLARAGTGRAVFIAPDDAAMRGIVEAAAFFA
PELDVIEFPAWDSLPYDRASPALSISAKRLAALHRLQTGKAKAQLVVTTANAVLQRVLSP
FRIRESVREFKPGTEIGRESLSLLLQKQGYSRTDTVIDKGEYAIRGSIVDVFPSGLDEAL
RLDFFGDELESLRSFDPNTQMSTGRLDSHLLLPASEALLDEDSIKRFRSRYREMFGANAT
QDPLYEAVSEGRRLAGMEHWLPLFEEKLVTLFDHLDDKDTVVIDNASLAAADERIKDVTD
YYEQRKEASGQAKGSYRPLDPKSLYLTSDEFKSALAETPAHRATTFDEPESDTVIDFGFR
SGRDFAPERARGDNVYPVLADHLKALGKAGKRPLLAAYSTGSRARIASILTEAGADVQLA
ESWQEALGLSAKGKPAAMVLPLEASFANDEMELLTEQDILGDRLVRRKKKRKDADAFLAE
LQALSVGDLIVHTEHGIGKYLGLQPVPVGKSKHDCVQLEYKGGDKLFIPVENIDVLSRYG
SSEEAVMLDRLGGEAWQKRRARLKERIREIAGELMQVAAQRALKKAPVLEVEDGVYNQFL
DRFQYEETDDQERAIADVLSDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMNGQQVAV
VAPTTLLARQHYQNFAERFSGFPLKVGRLSRLVPAKEMKDTREGLAKGDIDIVVGTHAIL
SKQTKFKNLGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELS
TIQTPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEQISDWLHENVP
EVKFVPAHGQMGAGEIEERMSAFYEGKYDVLLATTIVESGLDLPSANTIIIHRADIFGLA
QLYQLRGRVGRSKLRAYAYLTYEKDVALSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGELGLEAKPERVSPQITVDAPIMIPE
DYVPDLAVRMALYRRLNDAENMGEIEALAAEMIDRFGPLPSATENLVRLIQIKLQAIEAN
IAKIDVGAAGTLVTFHKDDFPDGPGLIAYVDRLQGTAKLRPDMKLVISRAWNSPESRLNG
LFQLTKGLSGIVRKAKKREKAAA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctttcccgcatcctcaaagccgacacaccgctgacgctggcgcaggtcgcg
cgcggcgcgcagccgctggtcatggccgaccttgcccgcgcagggacagggcgcgcggtc
ttcatcgcgcccgacgatgcggcgatgcgcgggatcgtcgaggcggccgcattcttcgcg
cccgaactcgacgtcatcgaatttcccgcttgggattcgctaccttacgaccgggcgagc
cccgcgctgtcgatcagtgccaagcgcctcgccgccttgcaccgcctccagacaggaaag
gcgaaagcgcagctggttgtcaccaccgccaatgcggttctccagcgcgtgctcagcccg
ttccgcattcgagagagcgtgcgcgagttcaagccgggcaccgagatcgggcgcgagagc
ctctcgctgctgctgcagaaacagggctacagccgcaccgacactgtgatcgacaagggc
gaatacgcgatccgcggctcgatcgtggacgtgttcccctccggcctcgacgaggcgctc
cgcctcgacttcttcggcgacgagctggagagcctgcgcagcttcgatcccaacacgcag
atgagcaccgggcggctcgacagccacctgctcctgcccgccagtgaggcgctgctcgac
gaagacagcatcaagcgcttccgcagccgttatcgcgagatgttcggcgccaatgcgacg
caggacccgctttacgaggcggtaagcgaaggccggcgactggcaggcatggaacactgg
ctgccgttgttcgaggagaagctggtcacgctgttcgaccacctcgacgacaaggacaca
gtggtcatcgacaatgcctcgctcgccgcggcggacgagcgcatcaaggacgtcaccgac
tattacgagcagcgcaaggaggcgagcggacaggccaagggcagctatcgccctctcgat
cccaaatcgctctacctgacctccgacgagttcaagtccgcgcttgcagaaacgccggcg
caccgcgcgaccacattcgacgagcccgagagcgacactgtcatcgatttcggcttccgt
tcgggccgcgatttcgcacctgagcgggcgcgcggcgacaatgtctatcctgtgctagcc
gatcacctgaaggcgctgggcaaggcaggcaagcgaccgctgctcgcggcctactccacc
ggcagccgcgcgcgcatcgcctcgatcctgaccgaggccggcgcggatgtgcagctggcc
gaaagctggcaggaagcgctgggcctgtccgccaagggcaagcctgcggccatggtgctg
cctctggaagccagtttcgccaatgacgagatggagctgctcaccgagcaggacatcctt
ggcgaccggctcgtgcgccgcaagaagaagcgcaaggacgccgacgccttcctcgccgaa
ctgcaggcgctcagcgtgggcgatctcatcgtccataccgagcacggcatcggcaagtat
ctcggcctgcagccggtccccgtcggcaagtccaagcacgattgcgtgcagcttgaatac
aagggcggcgacaagctcttcatacccgtagagaacatcgacgtactaagccgctacggc
tcgtccgaagaggcggtcatgctcgaccggctcggcggcgaagcatggcagaagcgccgc
gcgcgcctgaaggagcgcatccgcgagatcgccggcgagctgatgcaggtcgcggcccag
cgcgcgctcaagaaggcgccggtgctcgaagtcgaggacggcgtctacaaccagttcctc
gaccgcttccagtacgaggagaccgacgaccaggaacgcgcgattgccgatgtgctgagc
gatctggaaagcggcaagccgatggaccggctggtctgcggcgatgtcggtttcggcaag
accgaagtcgccctgcgcgccgctttcgtcgcggcgatgaacggacagcaggtcgcggtg
gtcgcgcccaccaccctgctcgcccgccagcactaccagaattttgccgagcgattctcc
ggcttccctctgaaggtcggccgtctatcgcgcctcgttcccgccaaggaaatgaaggac
acgcgcgaagggttggccaagggcgatatcgacatcgtcgtcggcacgcatgcgatcctg
tcgaagcagaccaagttcaagaacctggggctggtcatcgtcgacgaggagcagcgcttc
ggtgtgacgcacaaggagaagcttaagcagcttcgcgccgacgtgcacatgctcacgctc
accgcgacgcccatcccgcgcacgctgcagatggcgatgacggggctgcgcgaactctcc
accatccagaccccaccggtcgatcgcctcgcagtgcgaacctacgtgatggaatgggac
gacatggtgatgcgcgaggcattgctgcgcgaacatcatcgcggtggtcagagcttcatc
gtcgtgccgcgcatttccgacatggagcagatttcggactggcttcacgagaatgtgccc
gaagttaagttcgtgcctgcccacggccagatgggcgcaggcgagatcgaagaacggatg
agcgcgttttatgaggggaaatacgacgtcctcctcgccacgacgatcgtcgaaagcggg
ctcgatctgccgagcgcgaacacgatcatcatccaccgggccgacatcttcggcctcgcc
cagctctaccagctgcgcgggcgcgtgggccgctcgaaactgcgcgcctatgcgtatctg
acctatgagaaggacgtggcgctgtccgaagtggcggagaagcgcctcaaggtcctcggc
gatctcgacagcctcggcgcgggcttccagcttgcgagccacgatctcgacatccgcggc
gcgggcaacctgctcggtgacgaacagtcgggccacatccgcgaggtcggcttcgagctc
taccagtccatgctggaagacgcgatccttgccgccaaggccggcgagctcggccttgag
gccaagccggagcgtgtcagcccgcagatcacggtcgatgcaccgatcatgatccccgaa
gattacgtccccgacctcgccgtgcgcatggcgctctatcgccgcctgaacgatgcggag
aacatgggcgagatcgaggcgctggcggccgagatgatcgaccgcttcggtcctctgccc
tcggcgacggagaacctcgtccggctcatccagatcaagctgcaggccatcgaagcgaat
atcgccaagatcgatgtgggtgcggccggcacgctcgtcaccttccacaaggacgacttc
cccgacggtccgggcctgatcgcctatgtcgaccgcctgcagggcacggccaagctgcgg
cccgacatgaagcttgtcatcagccgcgcatggaattcgccggaaagccgcctcaacggg
ctattccagctgaccaagggcctttctggtatcgtgcggaaagcgaagaagcgcgagaag
gccgccgcctaa
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integrated database retrieval system
