Rahnella aquatilis HX2: Q7S_02165
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Entry
Q7S_02165 CDS
T01850
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
raa
Rahnella aquatilis HX2
Pathway
raa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q7S_02165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raa03019
]
Q7S_02165
03016 Transfer RNA biogenesis [BR:
raa03016
]
Q7S_02165
Enzymes [BR:
raa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Q7S_02165
Messenger RNA biogenesis [BR:
raa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q7S_02165
Transfer RNA biogenesis [BR:
raa03016
]
Prokaryotic type
tRNA degradation factors
Q7S_02165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
TFIIE_beta
LexA_DNA_bind
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AFE56698
LinkDB
All DBs
Position
468888..471386
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AA seq
832 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILEHLAKRETPASREEIGNELNLSGEEALEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRLEGVKKDDVYLSAEQMKMCI
HGDVVLAQPVGTDRKGRREARIVRVLVPKMSQIVGRYFTDAGAGFVVPDDSRLSFDILIP
ADAINGARMGYMVVVELTQRPTRRTKAVGKIVEVLGDKMGTSMAVDIALRTHEIPHVWPP
QVLKQVEDLSEQVPEEAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI
ADVSYYVRHGTALDDEARSRATSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SAQGKLTSSKFYEAVMSSHARLTYNKVWRIIEGDPELREQYSPLVKHLLELHTMYKVLDQ
ARAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMIMANIAAARFVEKHNE
PALFRVHDRPSDDHISALKSVLGELGLVMGGGMKPEPKDYAQIMDELADRPDREMLQTML
LRSMKQAIYDPENRGHFGLALPSYGHFTSPIRRYPDLALHRAIKYLLAKEHGTLKDRWTP
TGGWHSDYEDMLQLGEHCSMAERRADEATRNVADWLKCDFMQDHVGEVFTGIIASVTGFG
FFVRLNDLFIDGLVHVSSLDNDYYRYDNIGQRLVGESSGAVYRLGDTVEIRVEAVHMDER
KIDFALVSSTRKARGEGKTARDRAKKGGERTMRSAAPANAGRRRTAKKNVNFEPDSAFRK
DDAKPAKPKKEKAVSAVGKDGKPKKAKKPSDKTAKIAAATRAKRAKKKQSDS
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatatgaatcacctattcccagc
cgtgaatttattctggaacatctcgcgaaacgtgaaaccccagccagccgggaagaaatt
ggtaacgaactgaatctttccggagaagaagcgctggaagccctgcgtcgccgtttacgc
gccatggagcgtgacggccagttagtctttacccgccgccagtgctacgcgctgccggag
cgtctggacttgctgaaaggcacggttatcggccatcgtgatggttacggtttcctgcgc
ctggaaggcgtgaagaaagacgatgtgtatttgtctgctgaacaaatgaaaatgtgcatc
cacggtgacgtggtcctggcacaaccagttggaaccgaccgtaaaggccgccgtgaagcg
cgcatcgtgcgtgttctggtgcctaaaatgagccagattgtgggccgttactttaccgat
gcgggtgccggttttgtggtacccgacgacagtcgtctgagctttgatattctgatcccg
gccgatgccattaacggcgcacgcatgggatatatggtggtggtcgagctgacacagcgt
ccgacccgccgtaccaaagcggtcggtaaaatcgttgaagtcctcggcgataaaatgggc
accagcatggcggtagatatcgccctgcgcacccatgaaatcccgcatgtctggccgcca
caggttctcaaacaggtcgaagacctgagcgaacaggtgccggaagaagcgaaaaaaggt
cgcgtggatttacgcagtctgccgctggtcaccattgatggtgaagatgcccgtgacttc
gatgacgccgtgtactgtgagaaaaaacgtggtggtggctggcgcctgtgggtggcaatc
gccgacgtgagctattacgtccgtcacggcaccgcgctggacgatgaagcccgcagccgc
gctacgtcggtgtatttcccgtcacaggttgtgccgatgctgccggaagtgctgtctaat
ggcctgtgttcgctgaacccacaggtagaccgcctgtgtatggtctgtgagatgactatc
tccgcgcagggcaaactgaccagctctaaattctacgaagccgtgatgagctctcacgcg
cgtctgacatacaacaaagtctggcgcatcatcgaaggcgatccggaactgcgcgagcaa
tattcgccgctggttaagcatctgcttgaactgcacaccatgtacaaagtgctggatcag
gcgcgtgcagaacgtggcggtatcgcgttcgaaaccgaagaagcgaaatttatcttcaat
gctgagcgtcgtatcgagcgtgtcgaaccgaccgtacgtaacgatgcccacaaactgatc
gaagagtgcatgatcatggcgaacattgctgcggcgcgttttgttgaaaaacataacgaa
ccggcgctgttccgcgtgcatgaccgtccaagcgatgaccatatctccgcgctgaaaagc
gtgctgggtgaattgggtctggtgatgggcggcggcatgaaacctgagccaaaagattat
gctcagatcatggatgaactggccgatcgtcctgaccgcgaaatgctgcaaactatgtta
ctgcgttcaatgaaacaggcgatttacgatccggaaaatcgtggccactttggtctggca
ttgccttcttacgggcactttacgtcgccaatccgtcgttatccggatctggcattgcac
cgcgcgatcaagtatctgctggcgaaagagcacggcacgttgaaagatcgctggacgcca
accggcggctggcacagtgattacgaagatatgttgcagctcggcgagcattgttcgatg
gcagaacgccgcgcggacgaagccacccgcaacgtggcggactggctgaagtgcgacttc
atgcaggatcatgtgggtgaagtcttcaccggcattatcgccagtgtcaccggcttcggc
ttcttcgtacgcctcaacgatctgttcatcgacggcctggtgcacgtgtcatcgctcgac
aacgattattaccgttacgataacatcggtcagcgtctggtgggtgaatcctccggtgcg
gtttatcgcctgggcgatacggtagaaattcgtgttgaagccgtgcatatggacgagcgt
aaaatcgatttcgcgctggtttccagcacccgcaaagcacggggtgaaggcaaaaccgcg
cgtgaccgcgccaaaaaaggtggcgaacgtaccatgcgttctgccgcgccagctaatgct
ggccgtcggcgtaccgctaagaaaaacgtgaattttgagccggacagcgcgttccgcaaa
gatgacgcaaaaccagccaaaccgaagaaagagaaagcggtcagtgctgtgggtaaagac
ggtaaaccgaagaaagccaaaaagccttctgacaaaactgcaaaaattgcggcggccacc
agagccaaacgcgcgaagaaaaagcagtctgacagctag
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