Rahnella aquatilis HX2: Q7S_02440
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Entry
Q7S_02440 CDS
T01850
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
raa
Rahnella aquatilis HX2
Pathway
raa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q7S_02440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raa03019
]
Q7S_02440
03016 Transfer RNA biogenesis [BR:
raa03016
]
Q7S_02440
Enzymes [BR:
raa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Q7S_02440
Messenger RNA biogenesis [BR:
raa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q7S_02440
Transfer RNA biogenesis [BR:
raa03016
]
Prokaryotic type
tRNA degradation factors
Q7S_02440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
aRib
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_SLS1_2
DUF4172
Motif
Other DBs
NCBI-ProteinID:
AFE56753
LinkDB
All DBs
Position
526949..529072
Genome browser
AA seq
707 aa
AA seq
DB search
MLNPTIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA
GTQGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIDNINSLVAEVGKPKWDWQPEAVNA
ELHARVAALSESRLGDAYLITEKQERYNQINVIKADVVQALQAEDESLDAGEISDILGSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGESFIVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISIPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPSQDETTEQPAAE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgactattcgtaaattccaatacggccagcacaccgttacgctggaaact
ggcatgatggctcgtcaggcaactgccgctgttatggttagcatggacgacaccgcggta
ttcgttaccgttgttggccagaaaaaagctaaaccaggtcagagcttcttcccgctgact
gttaactatcaggagcgtacttacgctgctggtcgtatcccgggtagcttcttccgtcgc
gaaggccgtccaagtgaaggcgaaacactgacttcacgtctgattgaccgcccgattcgc
ccgctgttcccggactctttcctgaatgaagttcaggttatcgcgacggtcgtttctctg
aacccacaagttaaccctgacattgttgcgatgatcggtgcgtctgctgccctgagcctg
tctggtattccattcaatggcccgatcggtgctgcacgcgtgggttacatcaacgatcag
tatgttctgaacccaaccgcagatgagctgaaaacaagccgtctggacttggttgttgcc
ggtactcagggcgcggttctgatggttgagtctgaagctgaagtgttgagcgaagatcag
atgctgggcgcagtggtattcggccacgaacaacaacaaatcgttatcgacaacatcaac
tcactggttgctgaagttggtaagccgaaatgggactggcagccagaagcggttaacgca
gagctgcacgctcgcgtcgctgccttgtctgaatcccgtctgggtgatgcgtacctgatc
accgagaaacaagaacgttacaaccagattaatgtgatcaaagctgacgttgttcaggct
ctgcaggctgaagacgaatccctggacgctggtgaaatctctgacattctgggcagcatc
gagaagaatgtggttcgtagccgtgtgctgcgtggcgagccgcgtattgatggtcgcgaa
aaagacatgatccgtggtctggacgtgcgcactggcgttctgccacgtacacacggttct
gctctgttcacccgtggtgaaactcaggcgctggtcactgccactttgggtactgcgcgt
gatgcacagaacctggatgagctgatgggcgagaaaactgacagcttcctgttccattac
aacttccctccgtactcagtaggtgaaactgggatggtgggctcgccaaaacgtcgtgag
attggccatggccgtcttgctaaacgtggcgtgctggcgatgatgccaaaaccagaagac
ttcccgtacaccgtacgtgtggtttctgaaatcactgaatccaacggttcatcttcaatg
gcttctgtttgtggcgcatctctggccctgatggacgcaggtgttccgattaaagccgct
gttgcgggtatcgcaatgggtctggttaaagaaggcgaaagctttatcgttctgtccgac
attctgggtgacgaagatcatctgggcgacatggactttaaagtggccggtagccgcgac
ggtatcaccgcgctgcaaatggacattaaaatcgaaggtatcacccgcgaaatcatgcag
gtggctctgaatcaggctaagggtgcacgtctgcacattctgggcgtgatggaacaagct
atcagcattccacgtggcgatatctctcagtttgctccgcgtatccacaccatcaagatc
agcccggacaaaatcaaggacgtgatcggtaaaggtggttctgtgattcgtgcgctgacc
gaagaaaccggcaccacgatcgaaatcgaagatgacggtactgtgaaaatcgcagccacc
gacggcgagaaagcgaaatacgctattcgtcgtatcgaagagatcactgctgaaatcgaa
gttggccgtatctatcagggtaaagtgacccgtatcgtagactttggcgcatttgttgcc
atcggcggcggtaaagaaggtctggtgcatatttctcaaatcgctgacaagcgtgtagag
aaagtgactgattacctgcagatgggccaggaagttccggttaaagttctcgaagttgac
cgtcagggtcgtgtgcgtctgagcatcaaagaagctaccgcaccctctcaggacgaaaca
actgagcaacctgcagcagaataa
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