Rahnella aquatilis HX2: Q7S_02775
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Entry
Q7S_02775 CDS
T01850
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
raa
Rahnella aquatilis HX2
Pathway
raa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q7S_02775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
raa03021
]
Q7S_02775
Transcription machinery [BR:
raa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q7S_02775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4611
Sas-6-like_oligomerization
Motif
Other DBs
NCBI-ProteinID:
AFE56820
LinkDB
All DBs
Position
complement(606565..608403)
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENRPDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEVRLSDLITGFVDPNAEEEIAPTA
THVGSELTTEEQDDDDEDEDEDDDAEDDNSIDPELARQKFTELREQHEATRLVIKKNGRS
HKSAAEEILKLSDVFKQFRLVPKQFDFLVNSMRSMMDRVRAQERLIMKVCVEQCKMPKKN
FVNLFAGNETSDTWFDAALAMGKPWSEKLKEVTEDVQRGLMKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgaccag
atcgaagacatcatccagatgattaacgacatgggcatccaggtacttgaagaagcaccg
gacgccgatgatttgatgctggccgaaaaccgccctgataccgacgaagacgctgcagaa
gcggcggcgcaggtactttccagcgttgaatccgaaattggccgtaccaccgaccctgtg
cgtatgtatatgcgcgagatgggtaccgttgagttgctgacccgtgaaggcgaaatcgac
atcgccaaacgtatcgaagacggtatcaaccaggttcagtgctccgttgctgaatatcct
gaagctatcacttatttgttagagcaatatgaccgtgtagaagctggcgaagtccgcctg
tctgacttgatcacaggttttgttgaccctaacgccgaagaagaaatcgcaccaactgcg
actcacgtgggttctgaactgaccaccgaagagcaggatgatgatgatgaagacgaagat
gaagacgacgatgctgaagacgacaacagcatcgacccggaactggctcgccagaagttc
accgaactgcgtgaacagcatgaagcgacgcgtctggtcatcaagaaaaacggccgtagc
cacaagagcgcagcagaagaaatcctgaagctgtccgatgtgttcaaacaattccgttta
gtgccaaaacagttcgatttcctggttaacagcatgcgttccatgatggatcgcgttcgt
gctcaggaacgtctgatcatgaaagtgtgcgttgaacagtgcaaaatgccgaagaaaaac
ttcgtcaatctgttcgccggtaacgaaaccagcgatacctggtttgatgctgctctggca
atgggtaaaccctggtctgagaagctgaaagaagtcaccgaagacgtacagcgcggcctg
atgaagctgcgtcagatcgaagaagaaactggcctgactatcgaacaggtaaaagacatc
aaccgtcgcatgtctatcggcgaagcgaaagcccgtcgcgcgaagaaagagatggttgaa
gcaaacttacgtctggttatttcgatcgcgaagaaatacaccaaccgtggtctgcagttc
cttgacctgatccaggaaggtaacatcggcctgatgaaagccgttgataagtttgaatat
cgccgtggttataagttctcaacttatgcgacctggtggatccgtcaggctatcacccgc
tccatcgccgaccaagcgcgtaccatccgtatcccggtacatatgattgagacgatcaac
aaactcaaccgtatctcccgtcagatgctgcaagagatgggccgcgagccgacgccggaa
gaactggctgaacgtatgctgatgccggaagacaaaatccgcaaagtgctgaaaattgcg
aaagaaccaatctccatggaaacgccaatcggcgacgatgaagattcgcatctgggtgat
ttcatcgaggataccaccctcgagctgccactggattctgcaacgtctgaaagcctgcgt
tctgcaacacatgacgttctggctggcctgaccgcacgtgaagcgaaagttctgcgtatg
cgtttcggtatcgatatgaacactgaccacacgctggaagaagtgggcaaacagttcgac
gttacccgtgaacgtatccgtcagatcgaagcgaaagcgttgcgtaaactgcgccaccca
agccgctccgaagtgctgcgcagcttcctggacgattaa
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